View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20110_low_3 (Length: 403)
Name: NF20110_low_3
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 33268658 - 33268263
Alignment:
| Q |
1 |
ttaagctttcttatattcaaagtcaacaaattgagctttcttacagcagaagacnnnnnnn--tgtcaaaccaatttcatattaagtacacaaacacaat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33268658 |
ttaagctttcttatattcaaagtcaacaaattgagctttcttacagcagaagacaataaaaaatgtcaaaccaatttcatattaagtacacaaacacaat |
33268559 |
T |
|
| Q |
99 |
ccacaacaaaattaatgtaaacaagacataaaacaacattgatcatataaaaaagtgtacctaggcatcaatccatcaggttgaattccatgctcaagac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33268558 |
ccacaacaaaattaatgtaaacaagacaaaaaacaacattgatcatataaaaaagtgtacctaggcatcaatccatcaggttgaattccatgctcaagac |
33268459 |
T |
|
| Q |
199 |
aataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaatacttattatctctctcatcttctatatgtgctgcaaatgaaaatc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33268458 |
aataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaatacttattatctctctcatcttctatatgtgctgcaaatgaaaatc |
33268359 |
T |
|
| Q |
299 |
acaaggaggaggaaagtgcaaaggagagnnnnnnntacagcaaagaagaatgttagatatttaatttctcactttaaagtttataatatgatgatg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33268358 |
acaaggaggaggaaagtgcaaaggagagaaaaaaatacagcaaagaagaatcttagatatttaatttctcactttaaagtttataatatgatgatg |
33268263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 10034470 - 10034576
Alignment:
| Q |
170 |
tccatcaggttgaattccatgctcaagacaataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaatacttattatctctctc |
269 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10034470 |
tccatcaggttgaatgccatgttcaagacaatatagctcccaacatgaattaccaacctgaattccagcttgtccaatatgaatgcttattatctctctc |
10034569 |
T |
|
| Q |
270 |
atcttct |
276 |
Q |
| |
|
|| |||| |
|
|
| T |
10034570 |
attttct |
10034576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 35670650 - 35670764
Alignment:
| Q |
157 |
acctaggcatcaatccatcaggttgaattccatgctcaagacaataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaatact |
256 |
Q |
| |
|
|||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||| || ||||| || ||||| ||||| ||||| || || |||||||| |
|
|
| T |
35670650 |
acctaggcatcatgccgtcaggctgaatgccatgttcgagacagtaaagctcccagcaagaattaccgacttggattccggcttgaccgatgtgaatact |
35670749 |
T |
|
| Q |
257 |
tattatctctctcat |
271 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
35670750 |
gataatttctctcat |
35670764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University