View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20110_low_4 (Length: 400)
Name: NF20110_low_4
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 44614080 - 44613698
Alignment:
| Q |
1 |
ggtaatgtaattttgcagtcattcctttcaacaacaaagaaaacagtggtcctcaaatcagaccactaagagttatagaacttttcaagatattgttttc |
100 |
Q |
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| T |
44614080 |
ggtaatgtaattttgcagtcgttcctttcaacaataaagaaaacagtggtcctcaaatcagaccaccaagagttatagaacttttcaagatattgttttc |
44613981 |
T |
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| Q |
101 |
aatcgtaaagaagaatactgtatacaattattatttgagtgtatgtttggatgaacgatgaatttgataaaatcatggtggtaatattctaaaagtgtag |
200 |
Q |
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| T |
44613980 |
aatcgtaaagaagaatactgtatacaattattatttgagtgtatgtttggatgaacgatgaatttgataaaatcatggtggtaatattttaaaagtgtag |
44613881 |
T |
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| Q |
201 |
ttttgtttttgccaaaataataataactcaccataattccgacaatctcaccgtcaacccaaacaaagtttatgcatgctagctataagtgtaccacaca |
300 |
Q |
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| T |
44613880 |
ttttgtttttgccaaaataataataactcaccataattccgacaatctcaccatcaacccaaacaaagtttatgcatgctagctataagtgtaccacaca |
44613781 |
T |
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| Q |
301 |
tgaaaaaacaaatacatgaaacaaattctactaaaaccaatctactataacataacattcatagaaggaacataccaaaaaag |
383 |
Q |
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| T |
44613780 |
tgaaaaaacaaatacatgaaacaaattctactaaaaccaatctactataacataacattcatagaaggaacataccaaaaaag |
44613698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 2227707 - 2227615
Alignment:
| Q |
119 |
tgtatacaattattatttgagtgtatgtttggatgaacgatgaatttgataaaatcatggtggtaatattctaaaagtgtagttttgtttttgcca |
214 |
Q |
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| T |
2227707 |
tgtatacaatt--tatttgagtgtatgtttggatgaacgatgagtttgataaaattatggtggtaatactct-aaagttttgttttgtttttgcca |
2227615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 17058190 - 17058161
Alignment:
| Q |
16 |
cagtcattcctttcaacaacaaagaaaaca |
45 |
Q |
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| T |
17058190 |
cagtcattcctttcaacaacaaagaaaaca |
17058161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 24751420 - 24751456
Alignment:
| Q |
143 |
atgtttggatgaacgatgaatttgataaaatcatggt |
179 |
Q |
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| T |
24751420 |
atgtttggattgacgatgaatttgataaaatcatggt |
24751456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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