View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20110_low_6 (Length: 338)
Name: NF20110_low_6
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 37596151 - 37596467
Alignment:
| Q |
19 |
ttatcattttcttgttacttgttttcaaactcatcatagtttactaattcacaaatgaatattttctaaggggaaaagtgtcaaatggtgaataaaaagt |
118 |
Q |
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| T |
37596151 |
ttatcattttcttgttacttgttttcaaactcatcatagtttactaattcacaaatgaatattttctaaggggaaaagtgtcaaatggtgaataaaaagt |
37596250 |
T |
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| Q |
119 |
gcaaagaacaaaaaagggttattgtgagagaatgagagaaagtgacaatatagaagagaagagatcaatgctgaaatttgctaacaatagggtactgaat |
218 |
Q |
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| T |
37596251 |
gcaaagaacaaaaaagggttattgtgagagaatgagagaaagtgacaatatagaagagaagagatcaatgctgaaatttgctaacaatagggtactgaat |
37596350 |
T |
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| Q |
219 |
tttgtaaaaatgcttttgtcattttgtctattattattgatgcatatactgtgaagtaaaagtgtcaaaaatcttgtccttttcagtggtaaatgctttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37596351 |
tttgtaaaaatgcttttgtcattttgtctattattattgatgcatatactgtgaagtaaaagtgtcaaaaatcttgtccttttcagtggtaaatgctttg |
37596450 |
T |
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| Q |
319 |
aaattgacctatgcttc |
335 |
Q |
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||||||||||||||||| |
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| T |
37596451 |
aaattgacctatgcttc |
37596467 |
T |
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