View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20110_low_8 (Length: 318)
Name: NF20110_low_8
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 8352277 - 8351976
Alignment:
| Q |
1 |
atcaaaatgactaatattagagagatttggtgt------actcatagcttcgtggatttggttaaactcagcctaattaagcagtggttatctcatacct |
94 |
Q |
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||||||||||| ||| ||| ||||||||||||| |||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
8352277 |
atcaaaatgacaaattttaaagagatttggtgtgcttgtactcatagcttcttgaatttggttaaactgagcctagttaagcagtggttatctcatacct |
8352178 |
T |
|
| Q |
95 |
ggtttgttctattgaaccgtttctataaaattttcattgagcattaagctgtgattaccaacaaaagggtctctttggttgttctttggtaagttttatt |
194 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
8352177 |
ggtttgttctattgaaccgtttctatgaaattttcattgagcattaagcagtgattactaacaaaagggcctctttggttgttctttggtaagttttatt |
8352078 |
T |
|
| Q |
195 |
atgttcatgtttatagcacctatatatgatccaaacttatgcttattgaaataatcgttgtaataatttactttggctacataagctgattttattttgt |
294 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8352077 |
atgttcatgtttatagcacctatatatgattcaaacttatgcttattgaaataatcgttgtaataatttactttggctacataagc----tttattttgt |
8351982 |
T |
|
| Q |
295 |
acgaat |
300 |
Q |
| |
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|||||| |
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| T |
8351981 |
acgaat |
8351976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 28 - 272
Target Start/End: Complemental strand, 8365699 - 8365442
Alignment:
| Q |
28 |
tggtgtactcatagcttcgtggatttggttaaactcagcctaattaagcagtggttatctcatacctggtttgttctattgaaccgtttctataaaattt |
127 |
Q |
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|||||||||| ||||||| |||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||| |||||||| | |||| |
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| T |
8365699 |
tggtgtactcgtagcttcttggaattggttaaactcagcctagttaagcagcggttacctcatacctggtttgttctgttgaactgtttctatgagattt |
8365600 |
T |
|
| Q |
128 |
tcattgag--------------cattaagctgtgattaccaacaaaagggtctctttggttgttctttggtaagttttattatgttcatgtttatagcac |
213 |
Q |
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| || ||| ||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8365599 |
taatcgaggtacctgtttgatgcattac-ctgtggataccaacaaaagggcctctttgattgttctttggtaagttttattatgttgatgtttatagcac |
8365501 |
T |
|
| Q |
214 |
ctatatatgatccaaacttatgcttattgaaataatcgttgtaataatttactttggct |
272 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
8365500 |
ctatatatgatccaaacttatgcttattgaaataattgttgttataatttactttggct |
8365442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 269
Target Start/End: Complemental strand, 8357230 - 8357098
Alignment:
| Q |
138 |
ttaagctgtgattaccaacaaaagggtctctttggttgttct-ttggtaagttttattatgttcatgtttatagcacctatatatgatccaaacttatgc |
236 |
Q |
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|||||| ||| ||||||||||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
8357230 |
ttaagcagtggttaccaacaaaagggcctctttgattgttctgttgcaaagttttattatgttcatgtttatagcacctatgtatgatctgaacttatgc |
8357131 |
T |
|
| Q |
237 |
ttattgaaataatcgttgtaataatttactttg |
269 |
Q |
| |
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||||| |||| |||||||| ||||||||||||| |
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| T |
8357130 |
ttatttaaattatcgttgttataatttactttg |
8357098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 8357273 - 8357217
Alignment:
| Q |
28 |
tggtgtactcatagcttcgtggatttggttaaactcagcctaattaagcagtggtta |
84 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |
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| T |
8357273 |
tggtgtactcatagcttcttggatttggttaaacttagcctagttaagcagtggtta |
8357217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 7287022 - 7287122
Alignment:
| Q |
171 |
ggttgttctttggtaagttttattatgttcatgtttatagcacctatatatgatccaaacttatgcttattgaaataatcgttgtaataatttactttgg |
270 |
Q |
| |
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||||||||||| ||||||| | | |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7287022 |
ggttgttcttttgtaagttctctgttgttgatgtttataacacctatatatgatctgaacttatgcttattgaaataatcgttgtaataatttacattgg |
7287121 |
T |
|
| Q |
271 |
c |
271 |
Q |
| |
|
| |
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|
| T |
7287122 |
c |
7287122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 974512 - 974442
Alignment:
| Q |
180 |
ttggtaagttttattatgttcatgtttatagcacctatatatgatccaaacttatgcttattgaaataatc |
250 |
Q |
| |
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|||||||||| ||| ||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||| |
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| T |
974512 |
ttggtaagttctatgccgttgatgtttatagcacgaatatatgatccgaactaatgcttattgaagtaatc |
974442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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