View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20110_low_9 (Length: 304)
Name: NF20110_low_9
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 44945252 - 44944970
Alignment:
| Q |
1 |
ttgatgcactggctgagaaggcaatgatcgagatcaagaaacagtatgcagtgcttgatgctaaggttttgagccagataccgatcgcagggtttaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44945252 |
ttgatgcactggctgagaaggcaatgatcgagatcaagaaacagtatgcagtgcttgatgctaaggttttgagccagataccgatcgcagggtttaaaaa |
44945153 |
T |
|
| Q |
101 |
ggattagaataaattatctgtcaggattagctgttttgttcagatgtcaaatttacaagtcttactgcatctcctctttctattttgattaattgagtga |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44945152 |
ggattagaataaattatctg-caggattagctgttttgttcagatgtcaaatttacaagtcttactgcatctcctctttctattttgattaattgagtga |
44945054 |
T |
|
| Q |
201 |
aatatagtttgaggaataaaagtctatctagtcccagatttgtttttaggtttatcttgaatttgtttatcagtagcctttaatt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44945053 |
aatatagtttgaggaataaaagtctatctagtcccagatttgtttttaggtttatcttgaa-ttgtttatcagtagcctttaatt |
44944970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University