View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20111_high_2 (Length: 344)
Name: NF20111_high_2
Description: NF20111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20111_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 43410937 - 43410606
Alignment:
| Q |
13 |
gctgttgcggaaagtgtttggaagattgagaggggaagcttgaaaaagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattct |
112 |
Q |
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| T |
43410937 |
gctgttgcggaaagtgtttggaagattgagaggggaagcttgaaaaagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattct |
43410838 |
T |
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| Q |
113 |
tcaagatcagcatcacatgataacacaacccattctccttcatcatccaaatattttagaaccaagttgttcatatctgttaggttaaatcgccttgcaa |
212 |
Q |
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| T |
43410837 |
tcaagatcagcatcacatgataacacaacccattctccttcatcatccaaatattttagaaccaagttgttcatatctgttaggttaaatcgccttgcaa |
43410738 |
T |
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| Q |
213 |
tctcaagctgcaaatctctaaatccccacattgcttgcaagctaaacctgattttttcatccgcgaaagttgccttcactctgaaagcacccctttctag |
312 |
Q |
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| T |
43410737 |
tctcaagctgcaaatctctaaatccccacattgcttgcaagctaaacctgattttttcatccgcgaaagttgccttcactctgaaagcacccctttctag |
43410638 |
T |
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| Q |
313 |
gagtgttgatgatgaagaattgttgttgttcc |
344 |
Q |
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| T |
43410637 |
gagtgttgatgatgaagaattgttgttgttcc |
43410606 |
T |
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