View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20111_high_4 (Length: 329)

Name: NF20111_high_4
Description: NF20111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20111_high_4
NF20111_high_4
[»] chr2 (4 HSPs)
chr2 (16-300)||(23348413-23348697)
chr2 (16-296)||(12742092-12742372)
chr2 (16-296)||(18354744-18355030)
chr2 (133-301)||(10328457-10328627)
[»] chr7 (3 HSPs)
chr7 (16-296)||(43070819-43071099)
chr7 (16-124)||(1262493-1262601)
chr7 (16-124)||(48849391-48849499)
[»] scaffold0596 (1 HSPs)
scaffold0596 (16-301)||(1058-1343)
[»] chr3 (7 HSPs)
chr3 (16-301)||(53972718-53973003)
chr3 (16-300)||(19881544-19881828)
chr3 (143-301)||(37982939-37983097)
chr3 (16-151)||(37982756-37982891)
chr3 (34-124)||(31685485-31685575)
chr3 (57-102)||(17682201-17682246)
chr3 (57-102)||(19766443-19766488)
[»] chr5 (4 HSPs)
chr5 (16-296)||(9044206-9044486)
chr5 (16-296)||(7472922-7473206)
chr5 (16-296)||(30441983-30442263)
chr5 (180-262)||(40163917-40163996)
[»] chr8 (3 HSPs)
chr8 (16-125)||(14677630-14677739)
chr8 (23-117)||(31100488-31100582)
chr8 (31-117)||(5658175-5658261)
[»] scaffold0035 (1 HSPs)
scaffold0035 (16-125)||(35465-35574)
[»] chr4 (1 HSPs)
chr4 (18-125)||(29862969-29863076)
[»] chr6 (3 HSPs)
chr6 (31-117)||(33045062-33045148)
chr6 (48-125)||(10092908-10092985)
chr6 (16-58)||(22000988-22001030)
[»] scaffold0045 (1 HSPs)
scaffold0045 (20-125)||(11242-11347)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 23348697 - 23348413
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  23348697 gttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgt 23348598  T
Q  116 attagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgttt 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  23348597 atcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt 23348498  T
Q  216 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23348497 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgt 23348413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 12742092 - 12742372
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  12742092 gttgccgctctctccgccgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgt 12742191  T
Q  116 attagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgttt 215  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  12742192 atcagcaaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt 12742291  T
Q  216 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12742292 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat 12742372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 18355030 - 18354744
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||  ||||| ||||||||| ||||    
T  18355030 gttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgctgttgttgtctgcggcgtcgt 18354931  T
Q  116 attagccaggtgtgttgaagatgctactatatatat------cctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggt 209  Q
    || || ||||||||||||||||||||||||||||||      ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||    
T  18354930 atcagtcaggtgtgttgaagatgctactatatatatatatatcctaaatcgttgttcctgtagcttttccctaactttgttattccattacatttttggt 18354831  T
Q  210 ttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18354830 ttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcat 18354744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 133 - 301
Target Start/End: Complemental strand, 10328627 - 10328457
Alignment:
Q  133 aagatgctactatatatat--cctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatg 230  Q
    |||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10328627 aagatgctactatatatatatcctaaatcgttgttcatgtatcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatg 10328528  T
Q  231 atatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta 301  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10328527 atatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta 10328457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 43071099 - 43070819
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  43071099 gttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgt 43071000  T
Q  116 attagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgttt 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  43070999 atcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt 43070900  T
Q  216 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43070899 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcat 43070819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 1262493 - 1262601
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||    
T  1262493 gttgccgctttctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtatgcggcatcgt 1262592  T
Q  116 attagccag 124  Q
    || ||||||    
T  1262593 atcagccag 1262601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 48849499 - 48849391
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  48849499 gttgccgctttctccgtcgccgcagctctctcctttcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgt 48849400  T
Q  116 attagccag 124  Q
    || ||||||    
T  48849399 atcagccag 48849391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 1058 - 1343
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||    
T  1058 gttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcactttcgccgttgtcgtctgcggcatcgt 1157  T
Q  116 attagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgttt 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  1158 atcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt 1257  T
Q  216 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  1258 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatattttaaaatcatgtgta 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 53973003 - 53972718
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||    
T  53973003 gttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcactttcgtcgttgtcgtctgcggcatcgt 53972904  T
Q  116 attagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgttt 215  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  53972903 atcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt 53972804  T
Q  216 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53972803 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta 53972718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 19881828 - 19881544
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  19881828 gttgccgctctctccgtcaccgcagctctctcctgtcctcacccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgt 19881729  T
Q  116 attagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgttt 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  19881728 atcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt 19881629  T
Q  216 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19881628 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgt 19881544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 301
Target Start/End: Original strand, 37982939 - 37983097
Alignment:
Q  143 tatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatag 242  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37982939 tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatag 37983038  T
Q  243 attttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta 301  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37983039 attttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta 37983097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 37982756 - 37982891
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  37982756 gttgccgctctctccgtcgccgcagctctctcctatcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgt 37982855  T
Q  116 attagccaggtgtgttgaagatgctactatatatat 151  Q
    || ||||||||||||||||||||||| |||||||||    
T  37982856 atcagccaggtgtgttgaagatgctaatatatatat 37982891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 31685485 - 31685575
Alignment:
Q  34 gccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 124  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||    
T  31685485 gccgcagctctctcctgtcgtcgcccttcaccaatgatatcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag 31685575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 17682201 - 17682246
Alignment:
Q  57 cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg 102  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||    
T  17682201 cccttcaccaatgctctcgattccgacatcacctttgccgttgtcg 17682246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 19766443 - 19766488
Alignment:
Q  57 cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg 102  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||||||||    
T  19766443 cccttcaccaatgctctagattccgacatcaccttcgccgttgtcg 19766488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 9044206 - 9044486
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||||||    
T  9044206 gttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgatttcgacatcaccttcgtcgttgtcgtctgcagcatcgt 9044305  T
Q  116 attagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgttt 215  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  9044306 atcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt 9044405  T
Q  216 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9044406 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat 9044486  T

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Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 7473206 - 7472922
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  7473206 gttgtcgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgt 7473107  T
Q  116 attagccaggtgtgttgaagatgctactatatatat----cctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggttt 211  Q
    || |||||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  7473106 atcagccaggtgtgttgaagatgctactatatatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggttt 7473007  T
Q  212 gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7473006 gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat 7472922  T

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Target: chr5; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 30442263 - 30441983
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||    
T  30442263 gttgccgctctctccgttgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttggccgttgtcgtctgcggcatcgt 30442164  T
Q  116 attagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgttt 215  Q
    || |||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  30442163 atcagccatatgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgttt 30442064  T
Q  216 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  30442063 gtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatactttaaaatcat 30441983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 40163917 - 40163996
Alignment:
Q  180 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattat 262  Q
    ||||||||||||||||||||||| ||| ||||||||| | ||||||   ||||||||| ||||||||||| || |||||||||    
T  40163917 ctaactttgttattccattatatatttagtttgtttggatgtgaat---tgatatttacatagattttacaattatgtattat 40163996  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 14677739 - 14677630
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||    
T  14677739 gttgccgctctctccgtcgccgcagctctctcctatcgtcacccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcagcatcgt 14677640  T
Q  116 attagccagg 125  Q
    || |||||||    
T  14677639 atcagccagg 14677630  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 31100582 - 31100488
Alignment:
Q  23 ctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 117  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||| ||||||||||    
T  31100582 ctctctccgtcgccgcaactctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgccgttgtcgtctgtggcatcgtat 31100488  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 5658175 - 5658261
Alignment:
Q  31 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  || ||||||||| |||||||||||| ||||||||||    
T  5658175 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctcttgattccaacatcaccttcgccgttgtcgtctgtggcatcgtat 5658261  T

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Target: scaffold0035 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 35465 - 35574
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgt 115  Q
    ||||| |||||||| |||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  35465 gttgctgctctctccgtcgccgcagctctctcctgtcgtcgcctttgaccgatgctctcgattctgacatcaccttcgccgttgtcgtttgcggcatcgt 35564  T
Q  116 attagccagg 125  Q
    || |||||||    
T  35565 atcagccagg 35574  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 29863076 - 29862969
Alignment:
Q  18 tgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| || | ||||||| |||||||||||||||    
T  29863076 tgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccgatgctctcgattccgacatcacttttgccgttgtcatctgcggcatcgtat 29862977  T
Q  118 tagccagg 125  Q
     |||||||    
T  29862976 cagccagg 29862969  T

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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 33045148 - 33045062
Alignment:
Q  31 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||||||||||||||    
T  33045148 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgtcgttgtcgtctgcggcatcgtat 33045062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 10092908 - 10092985
Alignment:
Q  48 ctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 125  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||    
T  10092908 ctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccagg 10092985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 22001030 - 22000988
Alignment:
Q  16 gttgccgctctctctgtcgccgcagctctctcctgtcgtcgcc 58  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  22001030 gttgccgctctctccgtcgccgcagctctctcctgtcgtcgcc 22000988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 11347 - 11242
Alignment:
Q  20 ccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtatta 119  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||| | || |    
T  11347 ccgctctctccgtcgccgcagctctctcttgtcgtcgcccttcaccaatgctctcgaatccgacatcaccttcgccgttgtcgtctgcggcattgcatca 11248  T
Q  120 gccagg 125  Q
    ||||||    
T  11247 gccagg 11242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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