View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20111_high_7 (Length: 306)
Name: NF20111_high_7
Description: NF20111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20111_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 36 - 304
Target Start/End: Original strand, 33384213 - 33384481
Alignment:
| Q |
36 |
tgcattcctatttgttgacacattggacatttgtcattcatattggtattatgtcattcatgcacacgaatggaattacaaaaattctatactggatttt |
135 |
Q |
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| T |
33384213 |
tgcattcctatttgttgacacattggacatttgtcattcatattggtattatgccattcatgcacacgaatggaattacaaaaattctatactggatttt |
33384312 |
T |
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| Q |
136 |
acttttaacgtttcagccaagattgtgcaatttgcttgaatattttagtgccaaatccatcttaggacgattagttgtctttgctaaaactattatctat |
235 |
Q |
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| T |
33384313 |
acttttaacgtttcaatcaagattgtgcaatttgcttgaatattttagtgccaaatccatcttaggacggttagttgtctttgctaaaacttttatctat |
33384412 |
T |
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| Q |
236 |
gaataaggacaggtagcaaggccacataccaaacctaaacaaggacccaactccctcacaatcgagcat |
304 |
Q |
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| T |
33384413 |
gaatacggacaggtagcaaggccacataccaaacctaaacaaggacccaactccctcgcaatcaagcat |
33384481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 33375874 - 33376120
Alignment:
| Q |
36 |
tgcattcctatttgttgacacattggacatttgtcattcatattggtattatgtcattcatgcacacgaatggaattacaaaaattctatactggatttt |
135 |
Q |
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| T |
33375874 |
tgcattcttatttgttgacacattggacatttgtcatttatattggcattatgccattcatgcacacgaatggaattacataaattctatactacatcat |
33375973 |
T |
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| Q |
136 |
acttttaacgtttcagccaagattgtgcaatttgcttgaatattttagtgccaaatccatcttaggacgattagttgtctttgctaaaactattatctat |
235 |
Q |
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| T |
33375974 |
acttttaacgtttcagctaagattgtgcaatttgcttgaatactataatgccaaatccattttaggacggctagttgtctttgctaccacttttatctat |
33376073 |
T |
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| Q |
236 |
gaataaggacaggtagcaaggccacataccaaacctaaacaaggacccaactc |
288 |
Q |
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| T |
33376074 |
ga------agagctagcaaggccacataccaaacctaaacaaggacctaactc |
33376120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 277
Target Start/End: Original strand, 33390317 - 33390560
Alignment:
| Q |
40 |
ttcctatttgttgacacattggacatttgtcattcatattggtattatgtcattcatgcacacgaatggaattaca---aaaattctatactgga----- |
131 |
Q |
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| T |
33390317 |
ttcctattggttgacacattggacatttgtcatatatgttgacagcatgcgattcttgcaca--aatggaattgcagtgaaaattctatactggagtggg |
33390414 |
T |
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| Q |
132 |
ttttacttttaacgtttcagccaagattgtgcaatttgcttgaatattttagtgccaaatccatcttaggacgattagttgtctttgctaaaactattat |
231 |
Q |
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| T |
33390415 |
ttttacttttaacgtttcagccaagattgtctaatttgctcgagtattctagtgccaaatccatcttagggcggctagttgtctttgctaccacttttat |
33390514 |
T |
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| Q |
232 |
ctatgaataaggacaggtagcaaggccacataccaaacctaaacaa |
277 |
Q |
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| T |
33390515 |
ctacggatcatgacagctagcaaggccacagaccaaacctaaacaa |
33390560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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