View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20111_low_2 (Length: 349)
Name: NF20111_low_2
Description: NF20111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20111_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 55271630 - 55271907
Alignment:
| Q |
17 |
cgaacaaaaagtgtgtatttacgtgtgaaagtataaaaatagaattgataaaatgcagtgaacaattaaatgaataagtgagaaatgcaagtacctcgtc |
116 |
Q |
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| T |
55271630 |
cgaacaaaaagtgtgtatttacgtgtgaaagtataaaaatagaattgataaaatgcagtgaacaattaaatgaataagtgagaaatgcaagtacctcgtc |
55271729 |
T |
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| Q |
117 |
ggctttggttagttgaagtttacaacgagtgcagtagatgagattgtgagtgtctttgagctgtccttgcttacaaagaggacaccaaatttgttgtcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55271730 |
agctttggttagttgaagtttacaacgagtgcagtagatgagattgtgagtgtctttgagctgtccttgcttacaaagaggacaccaaatttgttctcca |
55271829 |
T |
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| Q |
217 |
aatgtctatgaattaagaattaagaattaatatggagaatgaaatgagaaagagagtatgaatattgttgaataaaaa |
294 |
Q |
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| T |
55271830 |
aatgtctatgaattaagaattaagaattaatttggagaatgaaatgagaaagagagtataaatattgttgaataaaaa |
55271907 |
T |
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