View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20112_high_2 (Length: 452)
Name: NF20112_high_2
Description: NF20112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20112_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 30270612 - 30270194
Alignment:
| Q |
20 |
caacagtttgtacaagactttctatgaaaggaaaatctcaactcccagagttgtacctctctattttctctcttgatcaaaatggttctataaaatgtat |
119 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30270612 |
caacagtttgtaaaagactttctatgaaaggaaaatctcaactccctgagttgtacctctctattttctctcttgatcaaaatggttctataaaatgtat |
30270513 |
T |
|
| Q |
120 |
atatataacttcacagctattaagagtaatcatacagtgttaattaaagccttgtaaaatacctaatta----ctaatgaacttaatcaatagaataaag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
30270512 |
atatataacttcacagctattaagagtaatcatacagtgttaattaaagccttgtaaaatacctaattaagtactaatgaacttaat----agaataaag |
30270417 |
T |
|
| Q |
216 |
caacatagagcagttgattccaagtatcaggcaaaccaggaagacaccaatggctacaatcagctgagtgatcagggtcagttttctgctgggaactcaa |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30270416 |
caacatagagcagttgattccaagtatcaggcaaaccaggaagacaccaatggctacaatcagctgagtgatcagggtcagttttctgctgggaactcaa |
30270317 |
T |
|
| Q |
316 |
ttcaccactgtaaattgaagggtgtccatctttcctcatttctgataacattgtgatgtcaagaagatatgcaggatcgcgcatttctcgaatcaccata |
415 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30270316 |
ttcaccactgtaaattgaagggtgtccatctttcctcatttctgataacattgtgatgtcaagaagatatgcaggatcgcgcatttctcgaatcaccatg |
30270217 |
T |
|
| Q |
416 |
ttaactactctcatttgttgatc |
438 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
30270216 |
ttaactactctcatttgttgatc |
30270194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 189 - 438
Target Start/End: Original strand, 29362308 - 29362556
Alignment:
| Q |
189 |
ctaatgaacttaatcaatagaataaagcaacatagagcagttgattccaagtatcaggcaaaccaggaagacaccaatggctacaatcagctgagtgatc |
288 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29362308 |
ctaatgaa-ttaatcaatagaataaagcaacatagagtagttaattccaagtatcaggcaaaccaggaagacaccaatggctacaatcagctgagagatc |
29362406 |
T |
|
| Q |
289 |
agggtcagttttctgctgggaactcaattcaccactgtaaattgaagggtgtccatctttcctcatttctgataacattgtgatgtcaagaagatatgca |
388 |
Q |
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||||| || | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29362407 |
agggtaagctctctgctgggaactcaattcaccactgtaaatggaagggtgtccatctttcctcatttctgataacattgtgatgtcaagaagttatgca |
29362506 |
T |
|
| Q |
389 |
ggatcgcgcatttctcgaatcaccatattaactactctcatttgttgatc |
438 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29362507 |
ggatcgtgcatttctcgaatcaccatatcaactactctcatttgttgatc |
29362556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 29361494 - 29361594
Alignment:
| Q |
16 |
gcaacaacagtttgtacaagactttctatgaaaggaaaatctcaactcccagagttgtacctctctattttctctcttgatcaaaatggttctataaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||| |||| |
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| T |
29361494 |
gcaacaacagtttgtacaagactttctaggaaaggaaaatctcaaccccctcagttgta-ctctctattttctctcttgatcaaaatgattctatgaaat |
29361592 |
T |
|
| Q |
116 |
gt |
117 |
Q |
| |
|
|| |
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|
| T |
29361593 |
gt |
29361594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 15113399 - 15113354
Alignment:
| Q |
232 |
attccaagtatcaggcaaaccaggaagacaccaatggctacaatca |
277 |
Q |
| |
|
||||||||||||||| | |||||| |||||||||||||| |||||| |
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|
| T |
15113399 |
attccaagtatcaggaacaccaggcagacaccaatggctgcaatca |
15113354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 30834987 - 30835046
Alignment:
| Q |
219 |
catagagcagttgattccaagtatcaggcaaaccaggaagacaccaatggctacaatcag |
278 |
Q |
| |
|
||||||| || ||||||||||||||||| | |||||||||||||| ||||||||||||| |
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| T |
30834987 |
catagagaagctgattccaagtatcaggaagtccaggaagacaccagtggctacaatcag |
30835046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 25962762 - 25962718
Alignment:
| Q |
232 |
attccaagtatcaggcaaaccaggaagacaccaatggctacaatc |
276 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || ||||| |
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|
| T |
25962762 |
attccaagtatcaggtaaaccaggaagacaccaatgactgcaatc |
25962718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 7812372 - 7812328
Alignment:
| Q |
232 |
attccaagtatcaggcaaaccaggaagacaccaatggctacaatc |
276 |
Q |
| |
|
|||||| |||||||| | ||| ||||||||||||||||||||||| |
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|
| T |
7812372 |
attccatgtatcaggtacaccgggaagacaccaatggctacaatc |
7812328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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