View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20112_low_1 (Length: 476)
Name: NF20112_low_1
Description: NF20112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20112_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 42845795 - 42846217
Alignment:
| Q |
1 |
acaagcagctaaggcagggaagagagaaaagacagaaatgacaatggattttttgtactgggaggctatgagccgtgcaaacgtcaatgaaattgctgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42845795 |
acaagcagctaaggcagggaagagagaaaagacagaaatgacaatggattttttgtactgggaggctatgagccgtgcaaacgtcaatgaaattgctgag |
42845894 |
T |
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| Q |
101 |
cactcaaagaaagaggcatggataacatgcttgcagaacttattcagagtttcctacctgaatctactcgttgatgcacacagggctactgatcttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42845895 |
cactcaaagaaagaggcatggataacatgcttgcagaacttattcagagtttcctacctgaatctactcgttgatgcacacagggctactgatcttgtgt |
42845994 |
T |
|
| Q |
201 |
ggctgagagatgtttcacctgactaagcaaaataattcatgctcagcataaggggatcgggaatgaaaagtgtggagtgcatgcgaccattctcgtcatc |
300 |
Q |
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| T |
42845995 |
ggctgagagatgtttcacctgactaagcaaaataattcatgctcaacataaggggatcgggaatgaaaagtgtggagtgcatgcgaccattctcgtcatc |
42846094 |
T |
|
| Q |
301 |
ctcgttgtctctaaatacttttcactttcccttcattttcatcttctccttaaaatcatccgcatccatgttttctttgctaggctctgcgagggaccac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42846095 |
ctcgttgtctctaaatacttttcactttcccttcattttcatcatctccttaaaatcatctgcatccatgttttctttgctaggctctgcgagggaccac |
42846194 |
T |
|
| Q |
401 |
tcccaattcgttacattctggat |
423 |
Q |
| |
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| T |
42846195 |
tcccaattcgttacattctggat |
42846217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 294 - 454
Target Start/End: Original strand, 42825334 - 42825493
Alignment:
| Q |
294 |
cgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcttctccttaaaatcatccgcatccatgttttctttgctaggctctgcgag |
393 |
Q |
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|||||||||||||||||||||||||||| | ||||||||| |||||| | ||||||| |||||||||| ||||| |||||||||||||||| |||| |
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| T |
42825334 |
cgtcatcctcgttgtctctaaatactttccgctttccctttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgag |
42825433 |
T |
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| Q |
394 |
ggaccactcccaattcgttacattctggatcatttccctttagatattggtcaaactcatg |
454 |
Q |
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| T |
42825434 |
gaaccactcccaattctccacattccggatca-tgccctttggatactggtcaaactcatg |
42825493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 41979923 - 41980056
Alignment:
| Q |
7 |
agctaaggcagggaagagagaaaagacagaaatgacaatggattttttgtactgggaggctatgagccgtgcaaacgtcaatgaaattgctga-gcactc |
105 |
Q |
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||||| ||| |||||||||||||||||||||| | ||||| | ||| ||||||| ||| |||| || ||||||||||| ||||||||||| ||| || |
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| T |
41979923 |
agctacggctgggaagagagaaaagacagaaagcaacatggactcattggactgggaagctgtgagacgggcaaacgtcaaggaaattgctgatgcaatc |
41980022 |
T |
|
| Q |
106 |
aaagaaagaggcatggataacatgcttgcagaac |
139 |
Q |
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||||| || |||||| | ||||||||||| |||| |
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| T |
41980023 |
aaagagaggggcatgaacaacatgcttgctgaac |
41980056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 41980173 - 41980247
Alignment:
| Q |
157 |
cctgaatctactcgttgatgcacacagggctactgatcttgtgtggctgagagatgtttcacctgactaagcaaa |
231 |
Q |
| |
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|||||||||||||||||| |||| |||||| |||||| | |||||| ||||||||| |||||||| ||||||| |
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| T |
41980173 |
cctgaatctactcgttgaaaaacacggggctattgatctcgagtggcttagagatgttccacctgaccaagcaaa |
41980247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 41980450 - 41980495
Alignment:
| Q |
234 |
aattcatgctcagcataaggggatcgggaatgaaaagtgtggagtg |
279 |
Q |
| |
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||||| |||||||||||||||||| |||| |||||||||||||||| |
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| T |
41980450 |
aattcttgctcagcataaggggattgggattgaaaagtgtggagtg |
41980495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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