View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20112_low_3 (Length: 398)
Name: NF20112_low_3
Description: NF20112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20112_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 29021046 - 29020665
Alignment:
| Q |
1 |
atgaaacaagtttttagctatgtttggtctaataaaggtcatcccacgactttggtgtttggagaatacaaagagtagccccttggtatttccggattgg |
100 |
Q |
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| T |
29021046 |
atgaaacaaatttttagctatgtttggtctaataaaggtcatcccacgactttggtgtttggagaatacaaagagtatccccttggtatttccggattgg |
29020947 |
T |
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| Q |
101 |
tgtgtcgacccaatgggctgtgtagggtttaatctgatattttctcttgcttggagttctggagttttctgtccagttttcagcatg-----atttagct |
195 |
Q |
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| T |
29020946 |
tgtgtcgacccaatgggctgtgtagggtttaatctcatattttctcttgcttggagttatggcgctttctgtccagttttcagtaggattgaatttagct |
29020847 |
T |
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| Q |
196 |
gctatggtttgatcaagaatcaaaatcgcattcctgagttgagtgtggatctgatttttgaaacttggtggttgtgatgtgacttatgaggggtgattaa |
295 |
Q |
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| T |
29020846 |
gctgtgg-ttgatcaagaatcaaaatggcattctcgagttgggtgagaatttgatttttgaaacgtggtggt-----tgtgacttgtgaggagtgatt-a |
29020754 |
T |
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| Q |
296 |
gatgttctattttcaatatttttgagttacaatgaatagtttacagaactatgactcaggaagattttggtgtattttgtgttgtctct |
384 |
Q |
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| T |
29020753 |
gatgttctattttcaatatttcggagttacaacaaatggtttacagaactatgactcaggaagattttggtgtattttgtgttgtctct |
29020665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 95 - 254
Target Start/End: Original strand, 28696511 - 28696669
Alignment:
| Q |
95 |
gattggtgtgtcgacccaatgggctgtgtagggtttaatctgatattttctcttgcttggagttctggagttttctgtccagttttcagcatgatttagc |
194 |
Q |
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| T |
28696511 |
gattggtgtgtcgacccaattggctgtgtagggtttaatctgatattttctcttgcttggagttctggatctttctgtccatttttcagcatgatttagt |
28696610 |
T |
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| Q |
195 |
tgctatggtttgatcaagaatcaaaatcgcattcctgagttgagtgtggatctgattttt |
254 |
Q |
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| T |
28696611 |
tgctgtgg-ttgatcaagaatcaaagtggcattcttgagttgggagtggatctgattttt |
28696669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 28696689 - 28696736
Alignment:
| Q |
282 |
tgaggggtgattaagatgttctattttcaatatttttgagttacaatga |
330 |
Q |
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| T |
28696689 |
tgaggggtgatta-gatgttctattttcaatattatagagttacaatga |
28696736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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