View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20112_low_4 (Length: 360)
Name: NF20112_low_4
Description: NF20112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20112_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 164 - 356
Target Start/End: Original strand, 12275476 - 12275668
Alignment:
| Q |
164 |
caaacgaaatcgattacattagtttaactaataatttttgtatcttaaaacgttgggaaaataagtaattttactaaaacactatcaaggacttaaaaat |
263 |
Q |
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| T |
12275476 |
caaactaaatcgattacattagtttaactaataatttttgtatcttaaaacgttgggaaaataagtaattttactaaaacactatcatggacttaaaaat |
12275575 |
T |
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| Q |
264 |
taaaattcgttttagatttcaatatgtgttgagtcagtctagctttcatggatttctgggttgttcttattagtcgtgcttaagtataatcta |
356 |
Q |
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| T |
12275576 |
taaaattcgttttatatttcaatatgtgttgagtcagtctagctttcatggatttctgggttgttcttattagtcgtgcttaagtataatcta |
12275668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 12275330 - 12275367
Alignment:
| Q |
18 |
cataggtctcttacaattaaaagaaagctctttgaagg |
55 |
Q |
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| T |
12275330 |
cataggtctcttacaattaaaagaaagatttttgaagg |
12275367 |
T |
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