View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20113_high_4 (Length: 369)
Name: NF20113_high_4
Description: NF20113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20113_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 29258461 - 29258796
Alignment:
| Q |
1 |
tatacaaggaggaaggttgacaattattaaaccaataactcatacaaaattatagagattagataacaaaaatatcagcaataataaggtcatttcacat |
100 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29258461 |
tatacaaggaggaaggttgacaataaataaaccaataactcatacaaaattatagagattagataacaaaaatatcagcaataataaggccatttcacat |
29258560 |
T |
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| Q |
101 |
caaaacccacgagcacatcataatgcaagcaactcttctaagtttgaaaa-atcaagagtataatgttttctgattttgcagggaataagaagatcctaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29258561 |
gaaaacccacgagcacatcataatgcaagcaactcttctaagtttgaaaaaatcaagagtataatgttttctgattttgctgggaataagaagatcctaa |
29258660 |
T |
|
| Q |
200 |
ctttctccatcattggaataatcaccctattgatcatacatgtaacttaactgcatctgtatttggagatgcttttcaaaaacaattttttgtacaataa |
299 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
29258661 |
ctttctccatcattggaatagtcaccctattgatcatacatgtaacttaactgcatctgtatttggagatgcttttgaaaaacaattttttgtccaataa |
29258760 |
T |
|
| Q |
300 |
tccaaacttctgccgaacagttaagaaataacagcc |
335 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
29258761 |
tccaaacttctgctgaacagttaagaaataacagcc |
29258796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 35235075 - 35234990
Alignment:
| Q |
4 |
acaaggaggaaggttgacaattattaaaccaataactcatacaaaattatagagattagataacaaaaatatcagcaataataagg |
89 |
Q |
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||||||| |||||||| |||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |
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| T |
35235075 |
acaaggaagaaggttggcaataagtaaaccaataactcatacaaaattatagatatcagataacaaaaatatcagcaacaataagg |
35234990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 29262360 - 29262294
Alignment:
| Q |
25 |
tattaaaccaataactcatacaaaattataga---gattagataacaaaaatatcagcaataataag |
88 |
Q |
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| T |
29262360 |
tattaaaccaataactcatacaaaattatagatattattagataacaaaaatatcagcaacaataag |
29262294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 29286623 - 29286534
Alignment:
| Q |
4 |
acaaggaggaaggttgacaattattaaaccaataactcatacaaaattatagagattagataacaaaaatatcagcaataataaggtcatt |
94 |
Q |
| |
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||||||| |||||||| |||| | |||||||||||||||| |||||||||||| || | |||||||||||||| |||| ||||||| |||| |
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| T |
29286623 |
acaaggaagaaggttggcaataagtaaaccaataactcatgcaaaattatagatatca-ataacaaaaatatccgcaacaataaggccatt |
29286534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 2376544 - 2376609
Alignment:
| Q |
242 |
taacttaactgcatctgtatttggagatgcttttcaaaaacaattttttgtacaataatccaaactt |
308 |
Q |
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|||||||||||| |||| |||||||||||||| ||||| | || |||||| ||||||||||||||| |
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| T |
2376544 |
taacttaactgcttctgcttttggagatgctttacaaaagc-atattttgtccaataatccaaactt |
2376609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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