View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20113_high_6 (Length: 319)
Name: NF20113_high_6
Description: NF20113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20113_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 9443440 - 9443151
Alignment:
| Q |
16 |
atagtaatgcatgtttgatatcacagtgtgttacataattttgcaaaagttacacgcaaatttgctatttgaatgacaaaacaaaatacaagtgtgctat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443440 |
atagtaatgcatgtttgatatcacagtgtgttacgtaattttgcaaaagttacacgcaaatttgctatttgaatgacaaaacaaaatacaagtgtgctat |
9443341 |
T |
|
| Q |
116 |
caccatcatcgtgagccactgtgattttgcaaaagctacactgcgaagtttgtctcattttaataaaacagtaaagaagt----nnnnnnnnnnnnnnnn |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9443340 |
caccatcaccgtgagccactgtgattttgcaaaagctacactgcgaagtttgcctcattttaataaaacagtaaagaagtaaaaaaaaatatatatatat |
9443241 |
T |
|
| Q |
212 |
nntaacctcatgcttagcttcttgcttaacagcttcccaaatagggtcagacacgtctaagatggattcaggatccgggtcaggtaaacc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443240 |
attaacctcatgcttagcttcttgcttaacagcttcccaaatagggtcagacacgtctaagatggattcaggatccgggtcaggtaaacc |
9443151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Original strand, 35069152 - 35069181
Alignment:
| Q |
127 |
tgagccactgtgattttgcaaaagctacac |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35069152 |
tgagccactgtgattttgcaaaagctacac |
35069181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 51617345 - 51617381
Alignment:
| Q |
121 |
tcatcgtgagccactgtgattttgcaaaagctacact |
157 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
51617345 |
tcatcgttagccagtgtgattttgcaaaagctacact |
51617381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University