View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20113_low_2 (Length: 689)
Name: NF20113_low_2
Description: NF20113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20113_low_2 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] scaffold0004 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 14 - 689
Target Start/End: Original strand, 49349517 - 49350194
Alignment:
| Q |
14 |
aatatatcattcatttaaactatttttagaatagacttcacttggtcatttacaaaacttctaaccctacatgctctttttagaatttagaataactcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49349517 |
aatatatcattcatttaaactatttttagaatagacttcacttggtcatttacaaaacttctaaccctacatgctctttttagaatttagaataactcca |
49349616 |
T |
|
| Q |
114 |
catgagacaatttttcaagttaatccattaacacaatccgctagatatatacaccatactgtatatcctacaagaaccnnnnnnngtctatcacacagag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
49349617 |
catgagacaatttttcaagttaatccattaacacaatccgctagatatatacaccatactatatatcctacaagaaccaaaaaaagtctatcacacagag |
49349716 |
T |
|
| Q |
214 |
tattcagattgcataatcctgatcaaaccaaattgctgacatccacagtttagaaacgtggcatacaagcaacaacttccaactcagaaaaataatgttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49349717 |
tattcagattgcataatcctgatcaaaccaaattgctcacatccacagttaagaaacgtggcatacaagcaacaacttccaactcagaaaaataatgttg |
49349816 |
T |
|
| Q |
314 |
tcccatataactgaaagaaaaagataattgtttatagaacaataccctttagtttccaccaggcaaaaaggagggg-aaaaacgcctagaagttttagtc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49349817 |
tcccatataactgaaagaaaaagataattgtttatagaacaataccctttagtttccaccaggcaaaaaggaggggaaaaaacgcctagaagttttagtc |
49349916 |
T |
|
| Q |
413 |
tacaatgagcacataaagcccttgaaagacaaatgaatccaattatacaaaattcaaatatccctcaattacaacactttgagctgaggccatgggacat |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49349917 |
tacaatgagcacataaagcccttgaaagacaaatgaatccaattatacaaaattcaaatatccctcaattacaacactttgagctgaggccatgggacat |
49350016 |
T |
|
| Q |
513 |
agattttccacttttactcactctttgatctaagttctttgatggcagtagaggatcattctcagtatactgtatgtttattgatacacttcttctta-- |
610 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350017 |
aaattttccactttt----actctttgatctaagttctttgatggcagtagaggatcattctcagtatactgtatgtttattgatacacttcttcttaat |
49350112 |
T |
|
| Q |
611 |
---attaataccttccttaacaagctcttcatatatatttatagatgtctctgccnnnnnnntcagctcaaatttaagggag |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49350113 |
tatattaataccttccttaacaagctcttcatatatatttatagatgtctctgccaaaaaaatcagctcaaatttaagggag |
49350194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 204 - 579
Target Start/End: Original strand, 49361619 - 49361998
Alignment:
| Q |
204 |
tcacacagagtattcagattgcataatcctgatcaaaccaaattgctgacatccacagtttagaa----------acgtggcatacaagcaacaacttcc |
293 |
Q |
| |
|
||||||| | ||| ||||||||| |||| ||||| || || |||||| ||||||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
49361619 |
tcacacaaactatccagattgcagaatcttgatcgaatcatattgctcacatccacagtttagaatccacatgaaacgtggcacacaaacaacaacttcc |
49361718 |
T |
|
| Q |
294 |
aactcagaaaaataatgttgtcccatataactgaaagaaaaagataattgtttatagaacaatacccttta-gtttccaccaggcaaaaaggagggg-aa |
391 |
Q |
| |
|
||||||||||||| || || ||| |||| || ||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||| | || |
|
|
| T |
49361719 |
aactcagaaaaat---gtggtaccaaataaatgtaagaaaaagataattgtttatagaataataccctctaagtttccaccaggcaaaatggaagaataa |
49361815 |
T |
|
| Q |
392 |
aaacgcctagaagttttagtctacaatgagcacataaagcccttgaaagacaaatgaatccaattatacaaaattcaaatatccctcaattacaacactt |
491 |
Q |
| |
|
||| |||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
49361816 |
aaatgcctttaatttttagtctaca-tgagcacataaagcccttgaaagacaaatgaatccaattattcaaaatttaaatatccctcaattacaacactt |
49361914 |
T |
|
| Q |
492 |
tgagctgaggccatgggacatagattttccacttttactcactctttgatctaagttctttgatggcagtagaggatcattctcagta |
579 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
49361915 |
tgagccgaggccatgggacgtaaattttccactttt----actccttgatctaagttcttcaatggcagtagaggatcattcttagta |
49361998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 19030210 - 19030309
Alignment:
| Q |
204 |
tcacacagagtattcagattgcataatcctgatcaaaccaaattgctgacatccacagtttagaaacgtggcatacaagcaacaacttccaactcagaaa |
303 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19030210 |
tcacacagagtatccagattgcagaatcctgattaaaccaaattgctcacatccacagtttagaaacgtggcatacaagcaacaacttccaactcagaaa |
19030309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 19030052 - 19030112
Alignment:
| Q |
100 |
ttagaataactccacatgagacaatttttcaagttaatccattaacacaatccgctagata |
160 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
19030052 |
ttagaataactccacataagacaatttttcatgttaatccattaaaacaatccactagata |
19030112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 252 - 662
Target Start/End: Original strand, 250072 - 250473
Alignment:
| Q |
252 |
acatccacagtttagaaacgtggcatacaagcaacaacttccaactcagaaaaataatgttgtcccatataactgaaagaaaaagataattgtttataga |
351 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250072 |
acatccatagtttagaaacgtggcatacaagcaacaacttccaactcaaaaaaat---gtggtcccatataactgaaagaaaaagataattgtttataga |
250168 |
T |
|
| Q |
352 |
acaataccctttagtttccaccaggcaaaaaggaggggaaaa-acgcctagaagttttagtctacaatgagcacataaagcccttgaaagacaaatgaat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250169 |
acaataccctttagtttccaccaggcaaaaaggaggggaaaaaacgcctagaagttttagtctacaatgagcacataaagcccttgaaagacaaatgaat |
250268 |
T |
|
| Q |
451 |
ccaattatacaaaattcaaatatccctcaattacaacactttgagctgaggccatgggacatagattttccacttttactcactctttgatctaagttct |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
250269 |
ccaattatacaaaattcaaatatccctcaattgcaacactttgagctgaggccatgggacataaattttccactttt----actctttgatctaagttct |
250364 |
T |
|
| Q |
551 |
ttgatggcagtagaggatcattctcagtatactgtatgtttattgatacacttcttcttaattaataccttccttaacaagctcttcatatatatttata |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250365 |
ttgatggcagtagaggatcattctcagtatactgtatgtttattgataca---cttcttaattaataccttccttaacaagctcttcatatatatttata |
250461 |
T |
|
| Q |
651 |
gatgtctctgcc |
662 |
Q |
| |
|
|||||||||||| |
|
|
| T |
250462 |
gatgtctctgcc |
250473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 249771 - 249946
Alignment:
| Q |
14 |
aatatatcattcatttaaactatttttagaatagacttcacttggtcatttacaaaacttctaaccctacatgctctttttagaatttagaataactcca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
249771 |
aatatatcattcatttaaactatttttagaatagacttcacttagtcatttacaaaacttctaaccctacatgctctttttagaatttagaataactcca |
249870 |
T |
|
| Q |
114 |
catgagacaatttttcaagttaatccattaacacaatccgctagatatatacaccatactgtatatcctacaagaa |
189 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
249871 |
catgagacaatttttcaagttaatcaactaacacaatccgctagatatatacaccatactatatatcctacaagaa |
249946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 42200000 - 42199941
Alignment:
| Q |
93 |
ttagaatttagaataactccacatgagacaatttttcaagttaatccattaacacaatcc |
152 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42200000 |
ttagaatttagaacaactccacaggagacaatttttcaagttaatccattaacacaatcc |
42199941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 42199894 - 42199791
Alignment:
| Q |
218 |
cagattgcataatcctgatcaaac-----caaattgctgacatccacagtttagaaac----------gtggcatacaagcaacaacttccaactcagaa |
302 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42199894 |
cagattgcaaaatcctgatcaaaccaaaccaaattgctgacatccacggtttagaaaccacattaaatgtggcatacaagcaacaacttccaactcagaa |
42199795 |
T |
|
| Q |
303 |
aaat |
306 |
Q |
| |
|
|||| |
|
|
| T |
42199794 |
aaat |
42199791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University