View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20113_low_5 (Length: 439)
Name: NF20113_low_5
Description: NF20113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20113_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 4168094 - 4168492
Alignment:
| Q |
11 |
cacagagagtcacaagtgcagcagtcatccacttgctgacagagtcacagctgccaatatt-gtaaagattggtgataaaagttgtaatgcaaggacagt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4168094 |
cacagagagtcacaagtgcagcagtcatccacttgctgacagagtcacagctgccaatatttgtaaagattggtgataaaagttgtaatgcaaggacagt |
4168193 |
T |
|
| Q |
110 |
gcctgtaggtagaaggtttgccaaatgtgccgtgctctgaaatgtcgaacttatagctgtttgtatcaagtttctctttgcttctggaacctctgcattt |
209 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4168194 |
gcctgtaggtagaaggtttgctaaatgtgccgtgctctgaaatgtcaaacttatagctgtttgtatcaagtttctctttgcttctggaacctctgcattt |
4168293 |
T |
|
| Q |
210 |
agcagtagtggaaccttgtgttcatccttgttcttagaatcatcattgatgcccatcgcttatacaacctctcttcaccttcctttaatgttttgttttg |
309 |
Q |
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| T |
4168294 |
agcagtagtggaaccttgtgttcatccttgttcttagaatcatcattgatgcccatcgcttatacaacctctcttcaccttcctttaatgttttgtttta |
4168393 |
T |
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| Q |
310 |
tatatgcagcagcataggtttgtttgttgataaggtatatatagttagggactgcttataaggtctggttcatatgccacatatgttttgctgcgttta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4168394 |
tatatgcagcagcataggtttgtttgttgataaggtatatatagttagggactgtttataaggtctggttcatatgccacatatgttttgctgcgttta |
4168492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 4179021 - 4179330
Alignment:
| Q |
11 |
cacagagagtcacaagtgcagcagtcatccacttgctgacagagtcacagctgccaatatt-gtaaagattggtgataaaagttgtaatgcaaggacagt |
109 |
Q |
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|||| |||||||||||| ||| |||||| |||||| ||||||||||||| |||||| ||| ||||| |||||||| |||||||| || || || ||||| |
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| T |
4179021 |
cacatagagtcacaagtacagaagtcatggacttgcagacagagtcacagttgccaacatttgtaaaaattggtgacaaaagttggaaagccagaacagt |
4179120 |
T |
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| Q |
110 |
gcctgtaggtagaaggtttgccaaatgtgccgtgctctgaaatgtcgaacttatagctgtttgtatcaagtttctctttgcttctggaacctctgcattt |
209 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||| || | | |||| ||||||||||||||| ||||| |
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| T |
4179121 |
gcctgtaggtagaaggtttgccaaatgcgccgtgctttgaaatgtcgaacttatagctttctgtaccaggctcctctctgcttctggaacctccgcattc |
4179220 |
T |
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| Q |
210 |
agcagtagtggaaccttgtgttcatccttgttcttagaatcatc------------attgatgcccatcgcttatacaacctctcttcaccttcctttaa |
297 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||| |
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| T |
4179221 |
cgcaggagtggaaccttttgttcatc---gttcttagaatcatcatcgatttctaaattgatgtccatcgcggatacaacctcctttcaccttcctttaa |
4179317 |
T |
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| Q |
298 |
tgttttgttttgt |
310 |
Q |
| |
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|||| |||||||| |
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| T |
4179318 |
tgttatgttttgt |
4179330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 349
Target Start/End: Original strand, 4179350 - 4179381
Alignment:
| Q |
318 |
gcagcataggtttgtttgttgataaggtatat |
349 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4179350 |
gcagcataggtttgtttgttgataaggtatat |
4179381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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