View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20113_low_6 (Length: 435)

Name: NF20113_low_6
Description: NF20113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20113_low_6
NF20113_low_6
[»] chr3 (2 HSPs)
chr3 (271-435)||(12036586-12036753)
chr3 (164-276)||(12038642-12038754)
[»] chr1 (4 HSPs)
chr1 (34-310)||(22163870-22164146)
chr1 (273-321)||(20750714-20750762)
chr1 (67-115)||(11983270-11983318)
chr1 (371-434)||(11983574-11983637)
[»] scaffold0941 (1 HSPs)
scaffold0941 (373-431)||(3902-3960)
[»] chr4 (2 HSPs)
chr4 (73-115)||(17448840-17448882)
chr4 (82-115)||(27459576-27459609)
[»] chr5 (2 HSPs)
chr5 (285-338)||(23140311-23140364)
chr5 (285-338)||(26231158-26231211)
[»] scaffold0136 (1 HSPs)
scaffold0136 (67-115)||(26273-26321)
[»] chr6 (2 HSPs)
chr6 (67-115)||(16011672-16011720)
chr6 (65-113)||(19572766-19572814)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 271 - 435
Target Start/End: Complemental strand, 12036753 - 12036586
Alignment:
Q  271 agtcttccctttacctatcttggcgtccctatctttaaaggtaaaccaaaaacttctcattttcaaccccttgttga---aagaatcaagttgaaattcg 367  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||    
T  12036753 agtcttccctttacctatcttggggtccctatctttaaaggtaaaccaaaaacttctcattttcaaccccttgttgatagaataatcaagttgaaattcg 12036654  T
Q  368 catcttggaaagcatctctactttcaatggctggtagagttcaattagtgaagagtgtgattcaaagc 435  Q
    |||||||||||  ||||||||||||||||| |||||||||||||||||| || ||| |||||||||||    
T  12036653 catcttggaaaatatctctactttcaatggatggtagagttcaattagtaaaaagtttgattcaaagc 12036586  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 164 - 276
Target Start/End: Complemental strand, 12038754 - 12038642
Alignment:
Q  164 aagtctctggacagtgtgtgaacccagcaaaatcatcaatctatgcaggcgcaatatcaaatcataggctatcctctattgctacccagattggcttcaa 263  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12038754 aagtctctggacagtgtgtgaccccagcaaaatcatgaatctatgcaagcgcaatttcaaatcataggctatcctctattgctacccagattggcttcaa 12038655  T
Q  264 cattggaagtctt 276  Q
    |||||||||||||    
T  12038654 cattggaagtctt 12038642  T

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Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 34 - 310
Target Start/End: Complemental strand, 22164146 - 22163870
Alignment:
Q  34 aagcttacccttggttctagagataatcctgtcccatctcacattttgtatgcagatgatataatgattttttgcaaaggaatcagttctaacattcata 133  Q
    |||||||  |||||||||||||| ||||| || || |||||||| ||||| |||||||||||||||||||| | |||||||||||  || ||||||||      
T  22164146 aagcttattcttggttctagagacaatccggttccttctcacatcttgtacgcagatgatataatgattttctacaaaggaatcaactcaaacattcaac 22164047  T
Q  134 atctcactgatttatttatcaaatatgctcaagtctctggacagtgtgtgaacccagcaaaatcatcaatctatgcaggcgcaatatcaaatcataggct 233  Q
    ||||||||||| | |||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| ||| | ||| || |||||| |  |    
T  22164046 atctcactgatctttttatcaagtatgcacaagtttctggccagtgtgtgaatccagcaaaatcatcaatttatggaggtgtaatttctaatcatcgttt 22163947  T
Q  234 atcctctattgctacccagattggcttcaacattggaagtcttccctttacctatcttggcgtccctatctttaaag 310  Q
     || ||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||    
T  22163946 gtcatctattgctactcggattgggttcaaaattggcagtcttcccttcacctatcttggtgtcccaatctttaaag 22163870  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 20750762 - 20750714
Alignment:
Q  273 tcttccctttacctatcttggcgtccctatctttaaaggtaaaccaaaa 321  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  20750762 tcttccttttacctatcttggtgtccccatctttaaaggtaaaccaaaa 20750714  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 11983270 - 11983318
Alignment:
Q  67 ccatctcacattttgtatgcagatgatataatgattttttgcaaaggaa 115  Q
    |||||||| ||||| ||||||||||| || |||||||||||||||||||    
T  11983270 ccatctcatattttatatgcagatgacatgatgattttttgcaaaggaa 11983318  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 11983574 - 11983637
Alignment:
Q  371 cttggaaagcatctctactttcaatggctggtagagttcaattagtgaagagtgtgattcaaag 434  Q
    ||||||||||||| || || ||||||||||||||||| |||||| | ||||||||  |||||||    
T  11983574 cttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttgttcaaag 11983637  T

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Target: scaffold0941 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0941
Description:

Target: scaffold0941; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 3902 - 3960
Alignment:
Q  373 tggaaagcatctctactttcaatggctggtagagttcaattagtgaagagtgtgattca 431  Q
    |||||||||||||| || || || || || ||||||||||||||||||||||| |||||    
T  3902 tggaaagcatctctcctctctattgcaggaagagttcaattagtgaagagtgttattca 3960  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 17448840 - 17448882
Alignment:
Q  73 cacattttgtatgcagatgatataatgattttttgcaaaggaa 115  Q
    |||||||||||||| ||||||||||||||||| || |||||||    
T  17448840 cacattttgtatgctgatgatataatgattttctgtaaaggaa 17448882  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 27459576 - 27459609
Alignment:
Q  82 tatgcagatgatataatgattttttgcaaaggaa 115  Q
    |||||||||||||||||||| |||||||||||||    
T  27459576 tatgcagatgatataatgatcttttgcaaaggaa 27459609  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 23140364 - 23140311
Alignment:
Q  285 ctatcttggcgtccctatctttaaaggtaaaccaaaaacttctcattttcaacc 338  Q
    ||||||||| || |||||||||| ||||||||||||| |||| ||| |||||||    
T  23140364 ctatcttggtgttcctatctttagaggtaaaccaaaagcttcacatcttcaacc 23140311  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 26231211 - 26231158
Alignment:
Q  285 ctatcttggcgtccctatctttaaaggtaaaccaaaaacttctcattttcaacc 338  Q
    ||||||||| || |||||||||| ||||||||||||| |||| ||| |||||||    
T  26231211 ctatcttggtgttcctatctttagaggtaaaccaaaagcttcacatcttcaacc 26231158  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 26321 - 26273
Alignment:
Q  67 ccatctcacattttgtatgcagatgatataatgattttttgcaaaggaa 115  Q
    |||||||||||| ||||||| |||||| ||||||| ||||| |||||||    
T  26321 ccatctcacattatgtatgctgatgatgtaatgatattttgtaaaggaa 26273  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 16011720 - 16011672
Alignment:
Q  67 ccatctcacattttgtatgcagatgatataatgattttttgcaaaggaa 115  Q
    |||||||||  ||| |||||||||||| ||||||| |||||||||||||    
T  16011720 ccatctcactctttttatgcagatgatctaatgatcttttgcaaaggaa 16011672  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 19572766 - 19572814
Alignment:
Q  65 tcccatctcacattttgtatgcagatgatataatgattttttgcaaagg 113  Q
    ||||||| |||||||||||||| |||||||| ||| | |||||||||||    
T  19572766 tcccatcacacattttgtatgctgatgatatgatgctattttgcaaagg 19572814  T

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