View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20113_low_7 (Length: 425)
Name: NF20113_low_7
Description: NF20113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20113_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 67 - 377
Target Start/End: Complemental strand, 45338825 - 45338515
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45338825 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttgct |
45338726 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45338725 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
45338626 |
T |
|
| Q |
267 |
ataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45338625 |
ataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
45338526 |
T |
|
| Q |
367 |
aatctccaaca |
377 |
Q |
| |
|
||||||||||| |
|
|
| T |
45338525 |
aatctccaaca |
45338515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 67 - 377
Target Start/End: Complemental strand, 45336513 - 45336203
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45336513 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttgct |
45336414 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45336413 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
45336314 |
T |
|
| Q |
267 |
ataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
366 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45336313 |
ataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
45336214 |
T |
|
| Q |
367 |
aatctccaaca |
377 |
Q |
| |
|
||||||||||| |
|
|
| T |
45336213 |
aatctccaaca |
45336203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 67 - 378
Target Start/End: Complemental strand, 17649125 - 17648810
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||| | || ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17649125 |
caacaatgttttgtgaacaaagtaaaaaaaactaagatactttgatacatttagctgaagcatacataacaaatatatagagccaagccataagcttgct |
17649026 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattaccta-ggactctt--acttac |
263 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| || || ||| |
|
|
| T |
17649025 |
tgtaagattgaacataaaatatgcactaaatctactctaaacactagtcatcattacctaagaatattagacatcattacctaaggactattttacatac |
17648926 |
T |
|
| Q |
264 |
caaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataa-ca--acacaattaattattaaatcagaaa |
360 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||| | || |||||| |||||| ||| |||||| |
|
|
| T |
17648925 |
ttaataagcaacaatctaattatgacatt--aacttaaacaagcaacaagctaattatgacagaaaaacagcagcacacaagtaattaacaaaacagaaa |
17648828 |
T |
|
| Q |
361 |
aatatcaatctccaacaa |
378 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17648827 |
aatatcaatctccaacaa |
17648810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 67 - 330
Target Start/End: Complemental strand, 14662584 - 14662318
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14662584 |
caacaatgttttaggaacaaagtaaaaaaa-ctaagatactttgatacattaaactgaagcatacactacaaatatatagagccaagccataaacttgct |
14662486 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattaccta-ggac--tcttactta |
262 |
Q |
| |
|
||||| ||| ||||||| |||||||| |||||||||| ||| |||||||||| |||||||| ||| ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
14662485 |
tgtaaaactgaacataagatctgcacgaaatctactcttaagcactagtcattattacctagcaacaatagacatcattacctagggactgttttactta |
14662386 |
T |
|
| Q |
263 |
ccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaa |
330 |
Q |
| |
|
| ||||||||||| |||||| ||||||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
14662385 |
ctaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaattatgacagaaaa |
14662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 1454155 - 1454025
Alignment:
| Q |
93 |
aaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaa-tctgca |
191 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | | || |||||| |||||| |
|
|
| T |
1454155 |
aaaatctaagatactttgatacattaaactgaagcatacactacaaatatatagagccaagccataagctttcttgtaaaattgaaaataaaactctgca |
1454056 |
T |
|
| Q |
192 |
ctaaatctactctaaacactagtcatcatta |
222 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |
|
|
| T |
1454055 |
gtaaatctattttaaacactagtcatcatta |
1454025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 132882 - 132764
Alignment:
| Q |
105 |
actttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactct |
204 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||| || || ||||||||| |||||||||||| |
|
|
| T |
132882 |
actttaatacatcaaactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaatcaaatctgcaataaatctactct |
132783 |
T |
|
| Q |
205 |
aaacactagtcatcattac |
223 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
132782 |
aaacactagccatcattac |
132764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 67 - 378
Target Start/End: Complemental strand, 32798260 - 32797949
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32798260 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttgct |
32798161 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32798160 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
32798061 |
T |
|
| Q |
267 |
ataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
366 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32798060 |
ataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
32797961 |
T |
|
| Q |
367 |
aatctccaacaa |
378 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32797960 |
aatctccaacaa |
32797949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 67 - 377
Target Start/End: Complemental strand, 32800572 - 32800262
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32800572 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttgct |
32800473 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32800472 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
32800373 |
T |
|
| Q |
267 |
ataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
366 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32800372 |
ataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
32800273 |
T |
|
| Q |
367 |
aatctccaaca |
377 |
Q |
| |
|
||||||||||| |
|
|
| T |
32800272 |
aatctccaaca |
32800262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 67 - 377
Target Start/End: Complemental strand, 44734406 - 44734096
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44734406 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataagcttgct |
44734307 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44734306 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggactcttacttaccaa |
44734207 |
T |
|
| Q |
267 |
ataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
366 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44734206 |
ataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaatttttaaatcagaaaaatatc |
44734107 |
T |
|
| Q |
367 |
aatctccaaca |
377 |
Q |
| |
|
||||||||||| |
|
|
| T |
44734106 |
aatctccaaca |
44734096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 72 - 376
Target Start/End: Complemental strand, 44732090 - 44731786
Alignment:
| Q |
72 |
atgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaa |
171 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44732090 |
atgttttgtgaaaaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataagcttgcttgtaa |
44731991 |
T |
|
| Q |
172 |
gactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaaataag |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
44731990 |
gactaaacataaaatctgcactaaatctactctaaacactagtcatcatcacctaagaaccatatacatcattacctaggactcttacttaccaaataag |
44731891 |
T |
|
| Q |
272 |
caacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatcaatct |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44731890 |
caacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaatttttaaatcagaaaaatatcaatct |
44731791 |
T |
|
| Q |
372 |
ccaac |
376 |
Q |
| |
|
||||| |
|
|
| T |
44731790 |
ccaac |
44731786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 67 - 377
Target Start/End: Complemental strand, 1550411 - 1550100
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaa-gctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgc |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1550411 |
caacaatgttttgtgaacaaagtactaaaaagctaagatactttgatacattaaacttaagcatacattacaaatatatagagccaagccataagcttgc |
1550312 |
T |
|
| Q |
166 |
ttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1550311 |
ttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttacca |
1550212 |
T |
|
| Q |
266 |
aataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1550211 |
aataagcaacaatctaactatgacacttaaacttatacaagcaacacattaattatgacataaaataacaacacaattaattattaaatcagaaaaatat |
1550112 |
T |
|
| Q |
366 |
caatctccaaca |
377 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1550111 |
caatctccaaca |
1550100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 67 - 377
Target Start/End: Complemental strand, 9535509 - 9535199
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
9535509 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaaacatacactacaaatatatagagtcaagccataaacttgct |
9535410 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
266 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9535409 |
tgtaagactaaacataaaatctacactaaatctactctaaacactagtcatcattacctaagaaccatagaaatcattacctaggactcttacttaccaa |
9535310 |
T |
|
| Q |
267 |
ataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
366 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9535309 |
ataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattttgacagaaaataacaacacaattaattattaaaccagaaaaatatc |
9535210 |
T |
|
| Q |
367 |
aatctccaaca |
377 |
Q |
| |
|
||||||||||| |
|
|
| T |
9535209 |
aatctccaaca |
9535199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 47695724 - 47695769
Alignment:
| Q |
99 |
taagatactttgatacattaaacttaagcatacactacaaatatat |
144 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
47695724 |
taagataatttgatacattaaactaaagcatacactgcaaatatat |
47695769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 67 - 377
Target Start/End: Complemental strand, 28784767 - 28784457
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28784767 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagaatcaagccataagcttgct |
28784668 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28784667 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggactcttacttaccaa |
28784568 |
T |
|
| Q |
267 |
ataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatatc |
366 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28784567 |
ataagcaacaatctaactataacacttaaacttaaacaagcaacacattaattatgagagaaaataacaacacaattaatttttaaatcagaaaaatatc |
28784468 |
T |
|
| Q |
367 |
aatctccaaca |
377 |
Q |
| |
|
||||||||||| |
|
|
| T |
28784467 |
aatctccaaca |
28784457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 67 - 379
Target Start/End: Original strand, 48707585 - 48707903
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48707585 |
caacaatattttgtgaacaaagtactaaaagctaagatactttgatacgttaaatttaagcatacactacaaatatatagagtcaagccataagcttgct |
48707684 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactcttacttaccaa |
266 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48707685 |
tgtaagactaaacataaaatctacactaaatctactttaaacactagtcatcattacctaaaaaccatagacatcattacctaggactcttacttaccaa |
48707784 |
T |
|
| Q |
267 |
ataagcaacaatctaactatgac------acttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaa |
360 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48707785 |
ataaacaacaatctaactatgacacttaaacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaa |
48707884 |
T |
|
| Q |
361 |
aatatcaatctccaacaaa |
379 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48707885 |
aatatcaatctccaacaaa |
48707903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 99 - 330
Target Start/End: Original strand, 48023922 - 48024157
Alignment:
| Q |
99 |
taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatc |
198 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48023922 |
taagatacttttatacattaaactgaagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactgaacataaaatctgcactaaatc |
48024021 |
T |
|
| Q |
199 |
tactc-taaacactagtcatcattacctaagaaccatagatatcattacc-taggac--tcttacttaccaaataagcaacaatctaactatgacactta |
294 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| | |||| ||||||||| | |||| | |||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
48024022 |
tactcttaagcactagtcatcattacctaagttcattagacatcattaccttgggactgttttacttactaaataagcaacaatctaattatgacactta |
48024121 |
T |
|
| Q |
295 |
aacttaaacaagcaacacattaattatgacagaaaa |
330 |
Q |
| |
|
|| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
48024122 |
tacataaacaagtaacactttaattatgacagaaaa |
48024157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 5354551 - 5354688
Alignment:
| Q |
116 |
ttaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5354551 |
ttaaacttaagcatacactacaaatatatagagccaagccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtc |
5354650 |
T |
|
| Q |
216 |
atcattacctaagaaccatagatatcattacctaggac |
253 |
Q |
| |
|
|| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
5354651 |
attattacctaagaaccataaacatcattacctaggac |
5354688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 161 - 377
Target Start/End: Original strand, 48025095 - 48025316
Alignment:
| Q |
161 |
cttgcttgtaagactaaacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacctaggactc---t |
256 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||| || || | | |
|
|
| T |
48025095 |
cttgcttgtaagaaggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattaacttgggattgttt |
48025194 |
T |
|
| Q |
257 |
tacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca-caattaattattaaatc |
355 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||| || |||||||||||||| ||||||||||||||||| | || | || |||||| ||| | |
|
|
| T |
48025195 |
tacttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaacaaaac |
48025294 |
T |
|
| Q |
356 |
agaaaaatatcaatctccaaca |
377 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48025295 |
agaaaaatatcaatctccaaca |
48025316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 177 - 330
Target Start/End: Original strand, 48027291 - 48027448
Alignment:
| Q |
177 |
aacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacctagg-actctt--acttaccaaataagc |
272 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||||||||| ||| || |||||| |||||||| |
|
|
| T |
48027291 |
aacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattacctagggactgttttacttactaaataagc |
48027390 |
T |
|
| Q |
273 |
aacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaa |
330 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||| | ||||||| ||||||| |
|
|
| T |
48027391 |
aacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaa |
48027448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 330
Target Start/End: Original strand, 48024535 - 48024708
Alignment:
| Q |
161 |
cttgcttgtaagactaaacataaaatctgcactaaatctactctaaa-cactagtcatcattacctaagaaccatagatatcattacc-taggac--tct |
256 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||| | || |||||||||||||||||||||||| ||| | ||||||||| | |||| | | |
|
|
| T |
48024535 |
cttgcttgtaagaaggaacataaaatctacactaaatctactattaagcactagtcatcattacctaagaacaataaacatcattaccttgggactgttt |
48024634 |
T |
|
| Q |
257 |
tacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaa |
330 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| || |||||| |||||| ||||||||||||||||| |
|
|
| T |
48024635 |
tacttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaa |
48024708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 5913618 - 5913484
Alignment:
| Q |
74 |
gttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaaga |
173 |
Q |
| |
|
|||||| |||||||||| ||||| | ||||||||||||||||||| | | ||||| |||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
5913618 |
gttttgagaacaaagtaa-aaaagttgagatactttgatacattaagttgtatcatacttaacaaatatatagagtcaaaccataagcttgcttgtaaga |
5913520 |
T |
|
| Q |
174 |
ctaaacataaaatctgcactaaatctactctaaaca |
209 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
5913519 |
ttgaacataaaatctgcattaaatctactctaaaca |
5913484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 5353449 - 5353506
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaactta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5353449 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaactta |
5353506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 5907781 - 5907718
Alignment:
| Q |
315 |
taattatgacagaaaataacaa-cacaattaattattaaatcagaaaaatatcaatctccaaca |
377 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5907781 |
taattatgacagaaaattacaaacacaagtaattattaaaccagaaaaatatcaatctccaaca |
5907718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 5907859 - 5907771
Alignment:
| Q |
205 |
aaacactagtcatcattacctaagaaccatagatatcattacctag-gactctt--acttaccaaataagcaacaatctaactatgaca |
290 |
Q |
| |
|
||||| |||||||||||||||||||||| || | || ||||||||| |||| || |||| | |||||||||||||||||| ||||||| |
|
|
| T |
5907859 |
aaacattagtcatcattacctaagaaccgtatacattattacctagagactttttcacttgctaaataagcaacaatctaattatgaca |
5907771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 68 - 379
Target Start/End: Complemental strand, 22804864 - 22804551
Alignment:
| Q |
68 |
aacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgctt |
167 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
|
|
| T |
22804864 |
aacaatattttgtgaaaaaagtactaaaagttaagatactttgatacattaaacttaaacatacactacaaatatatagagccaagccataagtctgttt |
22804765 |
T |
|
| Q |
168 |
gtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggactc--ttacttacca |
265 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
22804764 |
gtaagactaaacataaaatctgcattaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggactcttttacttacca |
22804665 |
T |
|
| Q |
266 |
aataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaattaattattaaatcagaaaaatat |
365 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22804664 |
aataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaattatgagagaaaataacaacacaattaattattaaaccagaaaaatat |
22804565 |
T |
|
| Q |
366 |
caatctccaacaaa |
379 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22804564 |
caatctccaacaaa |
22804551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 93 - 330
Target Start/End: Original strand, 7230881 - 7231118
Alignment:
| Q |
93 |
aaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcac |
192 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||||||| ||||| ||||||||||||||||||| ||| |||| |||| | |||||||||||||||| |
|
|
| T |
7230881 |
aaaagctaagatactttgacacattaagttaaagcatacataacaaa-atatagagccaagccataaactttcttggaagattgaacataaaatctgcac |
7230979 |
T |
|
| Q |
193 |
taaatctactctaaacactagtcatcattacctaagaaccatagatatcattaccta-ggact--cttacttaccaaataagcaacaatctaactatgac |
289 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||| ||||||||| |||||||| |||||| |
|
|
| T |
7230980 |
taaatctgctctaaacactagtcatcattacctaggaaccatagacatcattacctacggactactttacttactaaataagcagcaatctaattatgac |
7231079 |
T |
|
| Q |
290 |
acttaaacttaaacaagcaacacattaattatgacagaaaa |
330 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
7231080 |
act--aacttaaacaagcaacaatctaattatgacagaaaa |
7231118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 44640179 - 44640115
Alignment:
| Q |
315 |
taattatgacagaaaat-aacaacacaattaatt-attaaatcagaaaaatatcaatctccaaca |
377 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
44640179 |
taattatgacagaaaaacaacaacacaaatcatttattaaaccagaaaaatatcaatctccaaca |
44640115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 67 - 336
Target Start/End: Original strand, 13108714 - 13108986
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
13108714 |
caacaatgttttgtgaacaaagtaa-aaaagctaagatactttgatacattaaactgaagcatacactacaaatatatggagtcaagccataagtttgct |
13108812 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattaccta-ggac--tcttactta |
262 |
Q |
| |
|
||||||||| || ||||||| || |||||||||||| ||| ||||||||||||||||| |||||| ||| |||||||||||| |||| | ||||||| |
|
|
| T |
13108813 |
tgtaagactgaatataaaatatgttctaaatctactcttaagcactagtcatcattacccaagaacaatatgtatcattacctagggactgttttactta |
13108912 |
T |
|
| Q |
263 |
ccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaa |
336 |
Q |
| |
|
| |||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
13108913 |
ctaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaattatgacagaaaacaacaa |
13108986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 67 - 377
Target Start/End: Original strand, 13111006 - 13111321
Alignment:
| Q |
67 |
caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgct |
166 |
Q |
| |
|
||||||| |||||||||||||||| ||||| |||| ||| |||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
13111006 |
caacaatattttgtgaacaaagtaataaaaactaaaatattttgatacattaaactgaagcataaaatacaaatatattgagccaagccataagcttgct |
13111105 |
T |
|
| Q |
167 |
tgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattaccta-ggac--tcttactta |
262 |
Q |
| |
|
||||||| | | |||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||| || |||||||| |||| | ||||||| |
|
|
| T |
13111106 |
tgtaagagtgagcataaaatttgcactaaatctactcttaagcactagtcatcattacctaagaacaatagacattattacctagggactattttactta |
13111205 |
T |
|
| Q |
263 |
ccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca-acacaattaattattaaatcagaaaa |
361 |
Q |
| |
|
| |||||||||||||||||| |||| ||||| || |||||||||||||| ||||||||||||||||| | || | || |||||| ||| ||||||| |
|
|
| T |
13111206 |
ctaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaattatgacagaaaacagcagtaaaaagtaattaacaaaacagaaaa |
13111305 |
T |
|
| Q |
362 |
atatcaatctccaaca |
377 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13111306 |
atatcaatctccaaca |
13111321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 74 - 335
Target Start/End: Complemental strand, 6723711 - 6723446
Alignment:
| Q |
74 |
gttttgtgaacaaagtactaaaagctaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttgcttgtaaga |
173 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||| |||||||||||||||| || ||||||||| ||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
6723711 |
gttttgagaacaaagtac-aaatgctaagatattttgatacattaaactaaatcatacactataaatatatagagccaagtcataagtttgtttgtaaga |
6723613 |
T |
|
| Q |
174 |
ctaaac--ataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattaccta-ggac--tcttacttaccaaat |
268 |
Q |
| |
|
|| ||| ||||||| || | |||||||||||||||||| |||||||||||||||||||| ||| | || || ||||| |||| | |||||||| |||| |
|
|
| T |
6723612 |
ctcaacatataaaatttgtattaaatctactctaaacacgagtcatcattacctaagaacaataaacattatcacctagggactgttttacttactaaat |
6723513 |
T |
|
| Q |
269 |
aagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca |
335 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
6723512 |
aagcaacaatctaattatgacacttacacttaaacaagcaacactttaattatgacagaaaacaaca |
6723446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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