View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20113_low_8 (Length: 420)

Name: NF20113_low_8
Description: NF20113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20113_low_8
NF20113_low_8
[»] chr4 (26 HSPs)
chr4 (226-420)||(44087212-44087404)
chr4 (55-134)||(5817482-5817561)
chr4 (55-134)||(42179239-42179318)
chr4 (55-134)||(50498211-50498290)
chr4 (57-133)||(51579323-51579399)
chr4 (55-119)||(32290215-32290279)
chr4 (55-131)||(32525127-32525203)
chr4 (55-133)||(20107111-20107190)
chr4 (55-134)||(37605793-37605872)
chr4 (55-134)||(55281209-55281288)
chr4 (55-133)||(17044004-17044082)
chr4 (55-133)||(25164574-25164652)
chr4 (55-131)||(51579582-51579657)
chr4 (55-134)||(22364563-22364642)
chr4 (55-134)||(43749093-43749172)
chr4 (55-133)||(24059236-24059314)
chr4 (55-136)||(45995994-45996075)
chr4 (55-122)||(25784022-25784089)
chr4 (59-134)||(41277220-41277295)
chr4 (56-131)||(48525328-48525403)
chr4 (55-100)||(39631274-39631319)
chr4 (58-130)||(36851231-36851303)
chr4 (57-136)||(3287087-3287166)
chr4 (60-134)||(26720003-26720077)
chr4 (55-88)||(14786853-14786886)
chr4 (62-123)||(25437008-25437068)
[»] chr8 (23 HSPs)
chr8 (55-134)||(45413640-45413719)
chr8 (55-134)||(2599532-2599611)
chr8 (55-134)||(28897996-28898075)
chr8 (55-134)||(10391407-10391486)
chr8 (55-134)||(43066006-43066085)
chr8 (62-134)||(8368473-8368545)
chr8 (55-136)||(1993740-1993821)
chr8 (55-134)||(14342290-14342370)
chr8 (59-134)||(41075699-41075774)
chr8 (56-134)||(11904855-11904933)
chr8 (62-136)||(45502670-45502744)
chr8 (59-134)||(31774729-31774804)
chr8 (55-133)||(27497174-27497251)
chr8 (59-136)||(16465712-16465789)
chr8 (56-120)||(12142083-12142147)
chr8 (74-136)||(41880209-41880271)
chr8 (57-134)||(35200559-35200636)
chr8 (55-95)||(4077102-4077142)
chr8 (55-123)||(44081068-44081136)
chr8 (178-227)||(28898119-28898169)
chr8 (56-136)||(31523612-31523692)
chr8 (88-136)||(10592010-10592058)
chr8 (174-225)||(35200686-35200738)
[»] chr1 (29 HSPs)
chr1 (55-134)||(527001-527080)
chr1 (55-134)||(39858348-39858427)
chr1 (55-134)||(46845758-46845837)
chr1 (59-136)||(49430564-49430641)
chr1 (54-133)||(13276567-13276646)
chr1 (57-134)||(40314095-40314172)
chr1 (55-134)||(6487729-6487808)
chr1 (55-134)||(1994954-1995033)
chr1 (55-134)||(44797568-44797647)
chr1 (56-134)||(26040972-26041050)
chr1 (55-133)||(27325731-27325809)
chr1 (56-136)||(7178211-7178291)
chr1 (58-134)||(29637312-29637388)
chr1 (55-134)||(40294833-40294912)
chr1 (55-133)||(1673370-1673448)
chr1 (57-127)||(15225100-15225170)
chr1 (60-134)||(48489455-48489529)
chr1 (60-134)||(29731194-29731268)
chr1 (61-133)||(19989246-19989318)
chr1 (55-134)||(2403027-2403106)
chr1 (55-134)||(32267567-32267646)
chr1 (56-134)||(47571665-47571743)
chr1 (55-100)||(40030839-40030884)
chr1 (174-225)||(526909-526961)
chr1 (76-131)||(15066126-15066181)
chr1 (178-225)||(13276474-13276522)
chr1 (178-225)||(39858471-39858519)
chr1 (56-100)||(33502660-33502704)
chr1 (178-225)||(49430484-49430532)
[»] chr6 (10 HSPs)
chr6 (55-134)||(23915973-23916052)
chr6 (55-133)||(14314089-14314167)
chr6 (57-134)||(1244658-1244735)
chr6 (55-136)||(34792751-34792832)
chr6 (55-134)||(9045834-9045913)
chr6 (60-127)||(29429590-29429657)
chr6 (60-133)||(12748217-12748290)
chr6 (55-120)||(9521931-9521998)
chr6 (54-100)||(16717990-16718036)
chr6 (178-225)||(23916096-23916144)
[»] chr5 (12 HSPs)
chr5 (55-134)||(15285330-15285409)
chr5 (55-134)||(13988248-13988327)
chr5 (55-130)||(35905995-35906070)
chr5 (55-134)||(36890378-36890457)
chr5 (56-134)||(12248275-12248353)
chr5 (56-136)||(33687649-33687729)
chr5 (57-130)||(1447853-1447926)
chr5 (56-136)||(43100308-43100388)
chr5 (55-119)||(11247193-11247257)
chr5 (59-115)||(8378349-8378405)
chr5 (178-225)||(15285453-15285501)
chr5 (55-123)||(20151385-20151453)
[»] chr2 (21 HSPs)
chr2 (55-134)||(3121611-3121690)
chr2 (55-130)||(24475807-24475882)
chr2 (55-134)||(33299980-33300059)
chr2 (57-134)||(36272763-36272840)
chr2 (55-134)||(32599350-32599429)
chr2 (55-133)||(13697068-13697146)
chr2 (55-131)||(4434695-4434771)
chr2 (55-124)||(14945848-14945917)
chr2 (55-136)||(5562937-5563018)
chr2 (55-134)||(40095264-40095343)
chr2 (55-95)||(23860305-23860345)
chr2 (55-131)||(25333145-25333221)
chr2 (55-119)||(36709308-36709372)
chr2 (55-134)||(42061333-42061412)
chr2 (55-124)||(14242627-14242696)
chr2 (55-134)||(33555465-33555544)
chr2 (56-134)||(40216411-40216489)
chr2 (174-222)||(24475714-24475763)
chr2 (55-134)||(17823580-17823659)
chr2 (178-226)||(3121734-3121783)
chr2 (62-123)||(37914359-37914419)
[»] chr7 (14 HSPs)
chr7 (55-131)||(31741044-31741120)
chr7 (56-134)||(42974480-42974558)
chr7 (55-131)||(38755000-38755076)
chr7 (55-133)||(46576345-46576423)
chr7 (56-131)||(28713679-28713754)
chr7 (55-126)||(48460660-48460731)
chr7 (55-133)||(47480116-47480193)
chr7 (56-131)||(38349564-38349639)
chr7 (61-134)||(11752604-11752677)
chr7 (55-134)||(51939-52018)
chr7 (55-126)||(30922820-30922891)
chr7 (55-125)||(33496500-33496570)
chr7 (58-124)||(43068765-43068831)
chr7 (56-134)||(37536417-37536495)
[»] chr3 (18 HSPs)
chr3 (55-134)||(23004757-23004836)
chr3 (55-134)||(8330694-8330773)
chr3 (55-134)||(50989204-50989283)
chr3 (55-134)||(51092336-51092415)
chr3 (58-134)||(33288136-33288212)
chr3 (57-133)||(38247801-38247877)
chr3 (53-134)||(12224105-12224186)
chr3 (55-134)||(9271111-9271190)
chr3 (62-130)||(54713532-54713600)
chr3 (60-131)||(39947262-39947333)
chr3 (51-131)||(36674624-36674704)
chr3 (55-134)||(8496707-8496786)
chr3 (59-134)||(48034911-48034986)
chr3 (55-100)||(29915095-29915140)
chr3 (55-100)||(29964248-29964293)
chr3 (174-225)||(23004885-23004937)
chr3 (76-124)||(40725869-40725917)
chr3 (58-126)||(46135531-46135599)
[»] scaffold0533 (1 HSPs)
scaffold0533 (55-134)||(10333-10412)
[»] scaffold0005 (1 HSPs)
scaffold0005 (55-88)||(52844-52877)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 226 - 420
Target Start/End: Complemental strand, 44087404 - 44087212
Alignment:
Q  226 ataaaataatgctataaatatcattcatttttattttaaattagtgaatataagcttcactcggtaattcctctttatttataacatcgtcaacacaccc 325  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44087404 ataaaataatgctataaatatcattcattttt-tttgaaattagtgaatataagcttcactcggtaattcctctttatttataacatcgtcaacacaccc 44087306  T
Q  326 acatctatactttaaccgacgtgggactcaactttagatcaacaaataagatgtcacttatttttgtcccttcctccttgtattcctcgaacttc 420  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44087305 acatctatactttaaccgacgtgggactcaac-ttagatcaacaaataagatgtcacttatttttgtcccttcctccttgtattcctcgaacttc 44087212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 5817561 - 5817482
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  5817561 agtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccatgtggtc 5817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 42179318 - 42179239
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  42179318 agtaatgatacatagaccaccttaggtggtatgtaccacttatacacccatgcacaattgtgacatgtgtccatgtggtc 42179239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 50498211 - 50498290
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||| |||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50498211 agtagtgatacatagatcaccttaggtagtatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtc 50498290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 51579323 - 51579399
Alignment:
Q  57 tagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||    
T  51579323 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccatgtggt 51579399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 32290215 - 32290279
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgaca 119  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  32290215 agtagtgatacatagaccatcttaggtggcatgtaccacttatacacccatacacaattgtgaca 32290279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 32525203 - 32525127
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  32525203 agtagtgatacatagaccatcttaggtggcatataccacttatacatccacacacaattgtgatatgtgtctatgtg 32525127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 20107111 - 20107190
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttataca-tccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||  ||  ||||||||||||||||||||||||||||    
T  20107111 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacaccccgcacacaattgtgacatgtgtccatgtggt 20107190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 37605872 - 37605793
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| |||||||    
T  37605872 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtc 37605793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 55281209 - 55281288
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| |||||||    
T  55281209 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtc 55281288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 17044004 - 17044082
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| ||||||    
T  17044004 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 17044082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 25164652 - 25164574
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| ||||||    
T  25164652 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 25164574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 51579582 - 51579657
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    |||||||||||| |||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||    
T  51579582 agtagtgataca-agaccaccttaggtggcatgtaccacttgtacacccaaatacaattgtgacatgtgtccatgtg 51579657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 22364642 - 22364563
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||| | || |||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  22364642 agtagtgatacataaatcaacttaggtggcatataccacttatacacccatatacaattgtgatatgtgtccatgtggtc 22364563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 43749093 - 43749172
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |||| ||||| |||||| |||||||    
T  43749093 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacataattttgacaagtgtccttgtggtc 43749172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 24059314 - 24059236
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||| ||||||||| || || |||| ||| | ||||||||||||||||||||||||||    
T  24059314 agtagtgatacatagaccaccttagatggcatgtatcatttgtacacccacatacaattgtgacatgtgtccatgtggt 24059236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 45996075 - 45995994
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| ||||| |||| | |||||||||    
T  45996075 agtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgttcttgtggtctc 45995994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 25784089 - 25784022
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgt 122  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  25784089 agtagtgatacatagatcatcttaggtggcatgtaccacttgtacatccacacataattgtgacatgt 25784022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 41277220 - 41277295
Alignment:
Q  59 gtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||| ||||||||||| |||||||||| | |||| ||| | ||||||||||||||||| |||||||||    
T  41277220 gtgatacatagatcaccttaggtgacatgtaccacctgtacacccacatacaattgtgacatgtgttcatgtggtc 41277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 48525328 - 48525403
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    ||||||||||||| ||||| ||||||||||| |||||||| |||||||| | | ||||||||||||||| ||||||    
T  48525328 gtagtgatacataaaccactttaggtggcatataccacttgtacatccacatataattgtgacatgtgttcatgtg 48525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 39631319 - 39631274
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttataca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39631319 agtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 39631274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 36851231 - 36851303
Alignment:
Q  58 agtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgt 130  Q
    |||||| |||||||||||||| |||||||||||||||| |||| |||  ||  ||||||||||||||||||||    
T  36851231 agtgatgcatagaccaccttaagtggcatgtaccacttgtacacccacgcatgattgtgacatgtgtccatgt 36851303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 3287087 - 3287166
Alignment:
Q  57 tagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    |||||||||||| |||||||||| ||| ||||||||||| |||| ||| |||||||| ||||| | |||| |||||||||    
T  3287087 tagtgatacataaaccaccttagatggtatgtaccacttgtacacccacacacaattttgacaagagtccttgtggtctc 3287166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 26720077 - 26720003
Alignment:
Q  60 tgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||| ||||||||||||||| |||||||||| |||| ||| |  ||||||| |||||||||  |||||||    
T  26720077 tgatacataaaccaccttaggtggcgtgtaccacttctacacccacattcaattgtaacatgtgtctttgtggtc 26720003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 14786886 - 14786853
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgt 88  Q
    |||||||||||||||||||||||||||| |||||    
T  14786886 agtagtgatacatagaccaccttaggtgacatgt 14786853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 25437068 - 25437008
Alignment:
Q  62 atacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtg 123  Q
    |||||| |||||||||||||| |||  |||  ||| ||||||||||||||||||||||||||    
T  25437068 atacatggaccaccttaggtgacatacacctttta-acatccatacacaattgtgacatgtg 25437008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 45413719 - 45413640
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45413719 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatatggtc 45413640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 2599532 - 2599611
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  2599532 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgttcatgtggtc 2599611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 28897996 - 28898075
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  28897996 agtagtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtc 28898075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 10391486 - 10391407
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||| ||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  10391486 agtaatgatacatagatcatcttaggtggcatgtgccacttatacacccatacacaattgtgacatgtgtccatgtggtc 10391407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 43066085 - 43066006
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||| |||||||    
T  43066085 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacacaattttgacaagtgtccttgtggtc 43066006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 8368545 - 8368473
Alignment:
Q  62 atacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||    
T  8368545 atacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccacgtggtc 8368473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 1993821 - 1993740
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||||| ||||| |||||| |||||||||    
T  1993821 agtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaattttgacaagtgtccttgtggtctc 1993740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 14342370 - 14342290
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaa-ttgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||| |||||| |||||||    
T  14342370 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaatttttgacaagtgtccttgtggtc 14342290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 41075774 - 41075699
Alignment:
Q  59 gtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||| | ||||||||||||||||| |||||||||    
T  41075774 gtgatacatagaccaccttaggtgacatgtaccacttgtacacccacatacaattgtgacatgtgttcatgtggtc 41075699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 11904855 - 11904933
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||| ||| | | |||||||||||||||||||||||||    
T  11904855 gtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtggtc 11904933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 45502670 - 45502744
Alignment:
Q  62 atacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||| ||||||||| |||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  45502670 atacataaaccaccttaagtggtatgtaccacttgtacattcatatacaattgtgacatgtgtccatgtggtctc 45502744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 31774729 - 31774804
Alignment:
Q  59 gtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||| |||||||||||| ||||  || | ||||||||||||||||| |||||||||    
T  31774729 gtgatacatagaccaccttaggtgacatgtaccacttgtacactcacatacaattgtgacatgtgttcatgtggtc 31774804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 27497174 - 27497251
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||||| | ||||||| ||||||||| ||||||||    
T  27497174 agtagtgataca-agaccactttaggtggcatgtaccacttgtacatccacagacaattgcgacatgtgttcatgtggt 27497251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 16465789 - 16465712
Alignment:
Q  59 gtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    |||||||||||||||||||||  |||||||||||||| || | ||| | |||||||||||||||||| | ||||||||    
T  16465789 gtgatacatagaccaccttagacggcatgtaccacttgtatacccacatacaattgtgacatgtgtctacgtggtctc 16465712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 12142083 - 12142147
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacat 120  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||| | | |||||||||||    
T  12142083 gtagtgatacataaaccaccttaggtggcatataccacttgtacatccacatataattgtgacat 12142147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 41880271 - 41880209
Alignment:
Q  74 ccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||||||||||||||| || |||||| |||||||||||||||| || || ||||||||||    
T  41880271 ccttaggtggcatgtaccatttgtacatctatacacaattgtgacacgtatctatgtggtctc 41880209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 35200559 - 35200636
Alignment:
Q  57 tagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||| ||||||||||||||||| ||  |||| |||| ||| | | |||||||||||||||||||| ||||    
T  35200559 tagtgatacataaaccaccttaggtggcatatattacttgtacacccacatataattgtgacatgtgtccatgcggtc 35200636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 4077142 - 4077102
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccactt 95  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  4077142 agtagtgatatatagaccaccttaggtggcatgtaccactt 4077102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 44081068 - 44081136
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtg 123  Q
    |||||||||||||| |||||||||| ||||||||| || || |||||||| ||  ||||||||||||||    
T  44081068 agtagtgatacatacaccaccttagatggcatgtatcatttgtacatccacacgtaattgtgacatgtg 44081136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 28898119 - 28898169
Alignment:
Q  178 agtggtacatagtgtatatggagaaaa-ggtgttcatcaaacattatccat 227  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  28898119 agtggtacatagtgtgtatggagaaaatggtgttcatgaaacattatccat 28898169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 31523692 - 31523612
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||||| |||||||| ||||| || |||||| ||||| |||||| ||| | |||||||| | ||||||||||| ||||    
T  31523692 gtagtgatagatagaccatcttagatgacatgtatcacttgtacatctatatataattgtgataagtgtccatgtgatctc 31523612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 10592010 - 10592058
Alignment:
Q  88 taccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    |||||||| |||| ||| | | |||||||||||||||||||||||||||    
T  10592010 taccacttgtacacccacatataattgtgacatgtgtccatgtggtctc 10592058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 35200686 - 35200738
Alignment:
Q  174 tggaagtggtacatagtgtatatggagaaaagg-tgttcatcaaacattatcc 225  Q
    |||||||||||||  |||| ||| ||||||||| |||||||||||||||||||    
T  35200686 tggaagtggtacaatgtgtgtatagagaaaagggtgttcatcaaacattatcc 35200738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 527080 - 527001
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  527080 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtc 527001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 39858348 - 39858427
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  39858348 agtagtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtc 39858427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 46845837 - 46845758
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46845837 agtagtgatacatagaccaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtc 46845758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 49430641 - 49430564
Alignment:
Q  59 gtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  49430641 gtgatacatagaccaccttaggtggcatgtaccacttatacatcaatacacaattgtgacatgtgtccatctggtctc 49430564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 13276646 - 13276567
Alignment:
Q  54 tagtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  13276646 tagtagtgatacatagaccaccttaggtggtatgtaccacttatacactcatacacaattatgacatgtgtccatgtggt 13276567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 40314095 - 40314172
Alignment:
Q  57 tagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40314095 tagtgatacataaaccaccttaggtagtatgtaccatttatacatccatacacaattgtgacatgtgtccatgtggtc 40314172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 6487729 - 6487808
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||    
T  6487729 agtagtgatacatagaccaatttaggtggcatgtaccacttgtacatccacacacaattgtgacatgtgtccacgtggtc 6487808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 1994954 - 1995033
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||  |||||||    
T  1994954 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtctttgtggtc 1995033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 44797647 - 44797568
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||| | |||||| |||||||    
T  44797647 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgataagtgtccttgtggtc 44797568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 26040972 - 26041050
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||| | |||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||| ||||||    
T  26040972 gtagtgatacacaaaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccacgtggtc 26041050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 27325809 - 27325731
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||| | |||||| ||||||    
T  27325809 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgataagtgtccttgtggt 27325731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 7178291 - 7178211
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||||||||||||||||||||||| ||||||||| || |||| ||| | |||||||||||| ||||| ||||||||||    
T  7178291 gtagtgatacatagaccaccttaggtgacatgtaccatttgtacacccacatacaattgtgacaagtgtctatgtggtctc 7178211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 29637388 - 29637312
Alignment:
Q  58 agtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| |||||||    
T  29637388 agtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtc 29637312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 40294912 - 40294833
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||| |||||||||| ||||||||| | || | ||||||||||||||||||| || ||||||||    
T  40294912 agtagtgatacatagaccactttaggtggcacgtaccacttgtccacctatacacaattgtgacatgtatctatgtggtc 40294833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 1673370 - 1673448
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| ||| | |||||| ||||||    
T  1673370 agtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattttgataagtgtccttgtggt 1673448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 15225170 - 15225100
Alignment:
Q  57 tagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtcca 127  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||| |  |||||||||||| ||||||    
T  15225170 tagtgatacatagaccaccttaggtggcatgtacaacttatacacccacatgcaattgtgacatatgtcca 15225100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 48489455 - 48489529
Alignment:
Q  60 tgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||| | ||||||||||||||| |||||||| |||||||||| | ||||||||||| |||||||||||||    
T  48489455 tgatacataaatcaccttaggtggcatataccacttgtacatccatatataattgtgacatctgtccatgtggtc 48489529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 29731194 - 29731268
Alignment:
Q  60 tgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||| ||||||||||||||||| |||||||  |||| ||| | | |||||||||||||||||||||||||    
T  29731194 tgatacataaaccaccttaggtggcatataccactagtacacccacatataattgtgacatgtgtccatgtggtc 29731268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 19989246 - 19989318
Alignment:
Q  61 gatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    |||||||| |||||||||| || ||| |||||||| |||||||| | |||| |||||||||||||||||||||    
T  19989246 gatacataaaccaccttagatgacatataccacttgtacatccacatacaagtgtgacatgtgtccatgtggt 19989318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 2403106 - 2403027
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||| ||| |||||||| ||| | |||| | |||||||    
T  2403106 agtagtgatacatagaccatcttagatggcatgtaccacttgtacacccacacacaattttgaaaagtgttcttgtggtc 2403027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 32267646 - 32267567
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||| |||| ||||||||||| | || |||| ||| |||||||| ||||| |||||| |||||||    
T  32267646 agtagtgatacatagaccatcttaagtggcatgtacaatttgtacacccacacacaattttgacaagtgtccttgtggtc 32267567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 47571743 - 47571665
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||| ||| ||||||||||||| ||| | |||||| |||| ||| | | |||||||||||||||||||||||||    
T  47571743 gtagtgatatataaaccaccttaggtgacatatgccacttgtacacccacatataattgtgacatgtgtccatgtggtc 47571665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 40030839 - 40030884
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttataca 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  40030839 agtagtgatacatagaccaccttaggtagcatgtaccacttgtaca 40030884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 526961 - 526909
Alignment:
Q  174 tggaagtggtacatagtgtatatggagaaaa-ggtgttcatcaaacattatcc 225  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  526961 tggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 526909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 15066181 - 15066126
Alignment:
Q  76 ttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    |||||| ||||||| || || ||||| |||||||||||||||||||||||||||||    
T  15066181 ttaggtagcatgtatcatttgtacattcatacacaattgtgacatgtgtccatgtg 15066126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 13276522 - 13276474
Alignment:
Q  178 agtggtacatagtgtatatggagaaaa-ggtgttcatcaaacattatcc 225  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  13276522 agtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 13276474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 39858471 - 39858519
Alignment:
Q  178 agtggtacatagtgtatatggagaaaa-ggtgttcatcaaacattatcc 225  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  39858471 agtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 39858519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 33502704 - 33502660
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttataca 100  Q
    ||||||||||||||||||| |||| || |||||||||||| ||||    
T  33502704 gtagtgatacatagaccacattagatgacatgtaccacttgtaca 33502660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 49430532 - 49430484
Alignment:
Q  178 agtggtacatagtgtatatggagaaaag-gtgttcatcaaacattatcc 225  Q
    ||||||||||||||| |||||||||||| |||||||| ||| |||||||    
T  49430532 agtggtacatagtgtgtatggagaaaagagtgttcatgaaatattatcc 49430484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 23915973 - 23916052
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23915973 agtagtgatacatagatcaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtc 23916052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 14314167 - 14314089
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| ||||||    
T  14314167 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 14314089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 1244735 - 1244658
Alignment:
Q  57 tagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| || || |||||| |||||||    
T  1244735 tagtgatacatagaccaccttaagtggcatgtaccacttgtacatccacacacaattttggcaagtgtccttgtggtc 1244658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 34792832 - 34792751
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| | | |||| ||||| |||||| |||||||||    
T  34792832 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatataattttgacaagtgtccttgtggtctc 34792751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 9045834 - 9045913
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||||| ||||| |||| | |||||||    
T  9045834 agtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaattttgacaagtgttcttgtggtc 9045913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 29429590 - 29429657
Alignment:
Q  60 tgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtcca 127  Q
    ||||||| |||| ||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||    
T  29429590 tgatacacagactaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtcca 29429657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 12748217 - 12748290
Alignment:
Q  60 tgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||| ||||| ||||||||||| |||||||| |||| ||| | | ||||||||||| ||||||||||||    
T  12748217 tgatacataaaccactttaggtggcatataccacttgtacacccacatataattgtgacatctgtccatgtggt 12748290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 9521998 - 9521931
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacac--aattgtgacat 120  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||| ||| ||||  |||||||||||    
T  9521998 agtagtaatacatagatcaccttaggtggcatgtaccacttgtacacccacacacataattgtgacat 9521931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 16717990 - 16718036
Alignment:
Q  54 tagtagtgatacatagaccaccttaggtggcatgtaccacttataca 100  Q
    ||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  16717990 tagtagtgatacataaaccaccttaggtggcatataccacttgtaca 16718036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 23916096 - 23916144
Alignment:
Q  178 agtggtacatagtgtatatggagaaaa-ggtgttcatcaaacattatcc 225  Q
    ||||||||||||||| |||| |||||| ||||||||| |||||||||||    
T  23916096 agtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcc 23916144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 15285330 - 15285409
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  15285330 agtagtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtc 15285409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 13988248 - 13988327
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| |||||||    
T  13988248 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtc 13988327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 35905995 - 35906070
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgt 130  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||    
T  35905995 agtaatgatacatagaccaccttaggtggtatgtatcacttatacacccatatacaattgtgacatgtgtccatgt 35906070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 36890378 - 36890457
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| |||||||    
T  36890378 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtc 36890457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 12248275 - 12248353
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||| | | |||||||||||||||||||||||||    
T  12248275 gtagtgatacataaatcaccttaggtggcatataccacttgtacatccacatataattgtgacatgtgtccatgtggtc 12248353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 33687649 - 33687729
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||||||||| | || |||||||||||| |||||||| |||||||||| | |||||||||||||||||||||| ||||    
T  33687649 gtagtgatacataaatcatcttaggtggcatataccacttgtacatccatatataattgtgacatgtgtccatgtgatctc 33687729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 1447926 - 1447853
Alignment:
Q  57 tagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgt 130  Q
    |||| ||| |||||| || |||||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  1447926 tagttatatatagacaactttaggtggcatgtaccacttatacatccacgcacaattgtgacatatgtccatgt 1447853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 43100388 - 43100308
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||||||||| |||| ||||||||| || |||||||| |||| ||| | | |||||||||||||||||||||||||||    
T  43100388 gtagtgatacataaaccatcttaggtggtatataccacttgtacacccacatataattgtgacatgtgtccatgtggtctc 43100308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 11247193 - 11247257
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgaca 119  Q
    ||||||||||||||||| ||||||| |||||| ||| |||| |||||||| |||||||| |||||    
T  11247193 agtagtgatacatagactaccttagatggcatatactacttgtacatccacacacaattttgaca 11247257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 8378349 - 8378405
Alignment:
Q  59 gtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgt 115  Q
    ||||||||||||||||||||| || ||||||||| || |||||||| ||||| ||||    
T  8378349 gtgatacatagaccaccttagatgacatgtaccatttgtacatccacacacagttgt 8378405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 15285453 - 15285501
Alignment:
Q  178 agtggtacatagtgtatatggagaaaa-ggtgttcatcaaacattatcc 225  Q
    ||||||||||||||| |||| |||||| ||||||||| |||||||||||    
T  15285453 agtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcc 15285501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 20151385 - 20151453
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtg 123  Q
    |||| ||||||||||||||| |||||| |||| ||||||||  ||| ||| ||| |||| |||||||||    
T  20151385 agtaatgatacatagaccactttaggtagcatataccacttgaacacccacacataattatgacatgtg 20151453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 3121611 - 3121690
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  3121611 agtagtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtc 3121690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 24475882 - 24475807
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgt 130  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||    
T  24475882 agtaatgatacatagaccaccttaggtggtatgtatcacttatacacccatacacaattgtgacatgtgtccatgt 24475807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 33299980 - 33300059
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||| |||||||||    
T  33299980 agtagtgatacatagaccaccttaagtggcatgtaccatttatacacccatatacaattgtgacatgtgttcatgtggtc 33300059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 36272840 - 36272763
Alignment:
Q  57 tagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||| |||||||    
T  36272840 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtc 36272763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 32599429 - 32599350
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||| |||||| |||||||    
T  32599429 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacataattttgacaagtgtccttgtggtc 32599350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 13697146 - 13697068
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| ||||||    
T  13697146 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 13697068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 4434771 - 4434695
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||| |||| |||| |||||||||||||||||||||    
T  4434771 agtagtgatatatagaccaccttatgtggcatgtaccacttgtacttccacacactattgtgacatgtgtccatgtg 4434695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 14945917 - 14945848
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgt 124  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||| ||||||||    
T  14945917 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaaatgtaacatgtgt 14945848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 5562937 - 5563018
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtctc 136  Q
    ||||||||||||||||| |  ||||||||||||||||| |||||||| |||| | |||| ||||||||||| ||||||||||    
T  5562937 agtagtgatacatagactattttaggtggcatgtaccatttatacattcatatataattttgacatgtgtcgatgtggtctc 5563018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 40095264 - 40095343
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||| | |||||| ||||| |||||  |||||||    
T  40095264 agtagtgatacatagaccaccttagatgacatgtaccacttgtacatccacatacaattttgacaagtgtcattgtggtc 40095343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 23860345 - 23860305
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccactt 95  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23860345 agtagtgatacatagaccaccttaggtggcatgtaccactt 23860305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 25333145 - 25333221
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    |||||| |||||||||||||||| | | ||||||||||||| |||||| | ||||| ||||||||||||| ||||||    
T  25333145 agtagttatacatagaccaccttggatcgcatgtaccacttgtacatcaacacacatttgtgacatgtgttcatgtg 25333221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 36709372 - 36709308
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgaca 119  Q
    |||| |||||||||||||| ||||||||| |||||||||||||||| ||| |||||||| |||||    
T  36709372 agtactgatacatagaccatcttaggtggtatgtaccacttatacacccacacacaattttgaca 36709308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 42061412 - 42061333
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||| ||| || ||||||||||||||||| |||| ||| | |||||| ||||| |||||| |||||||    
T  42061412 agtagtgatacatagagcactttgggtggcatgtaccacttgtacacccacatacaattttgacaagtgtccttgtggtc 42061333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 14242696 - 14242627
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgt 124  Q
    ||||||||||||||||||| ||||||||| ||||||||| | |||| ||| |||||||| ||||| ||||    
T  14242696 agtagtgatacatagaccatcttaggtggtatgtaccacctgtacacccacacacaattttgacaagtgt 14242627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 33555544 - 33555465
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||||   | |||||||| ||||| |||||  |||||||    
T  33555544 agtagtgatacatagatcaccttaagtggcatgtaccacttgtacacttacacacaattttgacaagtgtcattgtggtc 33555465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 40216411 - 40216489
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||| ||| |||||||||| ||  || |||||||| |||| ||| | | |||||||||||||||||||||||||    
T  40216411 gtagtgatatataaaccaccttagatgatatataccacttgtacacccacatataattgtgacatgtgtccatgtggtc 40216489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 24475763 - 24475714
Alignment:
Q  174 tggaagtggtacatagtgtatatggagaaaa-ggtgttcatcaaacatta 222  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  24475763 tggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacatta 24475714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 17823580 - 17823659
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||| |||||||||| ||| ||||| ||||| |||| ||| | |||||| ||| | |||||| |||||||    
T  17823580 agtagtgatacataaaccaccttagatggtatgtatcacttgtacacccacatacaattttgataagtgtccttgtggtc 17823659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 3121734 - 3121783
Alignment:
Q  178 agtggtacatagtgtatatggagaaaa-ggtgttcatcaaacattatcca 226  Q
    ||||||||||||||| |||| |||||| ||||||||| ||||||||||||    
T  3121734 agtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcca 3121783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 37914419 - 37914359
Alignment:
Q  62 atacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtg 123  Q
    ||||||| |||||||||||||||||  ||| ||| |||||||| ||||| ||||||||||||    
T  37914419 atacataaaccaccttaggtggcatacacc-cttttacatccacacacatttgtgacatgtg 37914359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 31741044 - 31741120
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  31741044 agtaatgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtctatgtg 31741120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 42974558 - 42974480
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||| |||||    
T  42974558 gtagtgatacataaaccaccttaggtggcatgtaccacttatacacccacatacaattgtgacatgtgttcatatggtc 42974480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 38755076 - 38755000
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||| ||||||| |||| |||||||||||||||||    
T  38755076 agtaatgatacatagaccaccttaggtggcatgtaccacttgaacacccatacataattatgacatgtgtccatgtg 38755000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 46576423 - 46576345
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| | ||| |||||| ||||||    
T  46576423 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttaacaagtgtccttgtggt 46576345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 28713679 - 28713754
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||| ||| | | ||||||||||||||||||||||    
T  28713679 gtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtg 28713754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 48460660 - 48460731
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtcc 126  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| | |||||| ||||| ||||||    
T  48460660 agtagtgatacatagaccaccttaggtggcatgtaccatttgtacatccacatacaattttgacaagtgtcc 48460731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 47480193 - 47480116
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    |||| ||||||||||||||||||||||||||||||||| || |||| ||| | ||||||||||||||||||||| ||||    
T  47480193 agtaatgatacatagaccaccttaggtggcatgtaccatttgtacaccca-atacaattgtgacatgtgtccatatggt 47480116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 38349639 - 38349564
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    ||||||||||||| |||| |||||||||||| |||||||| |||| ||| | | ||||||||||||||||||||||    
T  38349639 gtagtgatacataaaccatcttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtg 38349564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 11752604 - 11752677
Alignment:
Q  61 gatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||| ||||| |||| | | | | ||||||||||||||| || ||||||    
T  11752604 gatacatagaccaccttaggtggcatgtatcacttgtacacctacatataattgtgacatgtgttcacgtggtc 11752677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 51939 - 52018
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||| |||||| | || |||||| ||| |||||| | ||| || ||| |||||||    
T  51939 agtagtgatacatagaccaccttaggtggtatgtactatttgtacatctatatacaattttaacaagtatccttgtggtc 52018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 30922891 - 30922820
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtcc 126  Q
    |||||||||||||||| |||||||||||| ||||||||| | ||||| || ||| |||| ||||| ||||||    
T  30922891 agtagtgatacatagatcaccttaggtggtatgtaccacatgtacattcacacataattttgacaagtgtcc 30922820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 33496500 - 33496570
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtc 125  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||| ||| | | |||| ||||| |||||    
T  33496500 agtagggatacatagaccaccttaggtgacatgtaccacttgtacacccacatataattttgacaagtgtc 33496570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 43068831 - 43068765
Alignment:
Q  58 agtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgt 124  Q
    ||||||||| | |||||||||||| |||||||||||||| || |||| ||| |||| ||||||||||    
T  43068831 agtgatacacataccaccttaggtcgcatgtaccacttaaacctccacacataattttgacatgtgt 43068765  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 37536495 - 37536417
Alignment:
Q  56 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||| | || |||||||||||| || ||| | |||| ||| | | |||||||||||||||||||| ||||    
T  37536495 gtagtgatacataaatcatcttaggtggcatatatcacatgtacacccacatataattgtgacatgtgtccatgcggtc 37536417  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 23004757 - 23004836
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | |||||||||    
T  23004757 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtattcatgtggtc 23004836  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 8330773 - 8330694
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||| || |||||||||||||    
T  8330773 agtagtgatacatagaccaccttagatggcatgtaccacttgtacattcacacacaattgtgatatatgtccatgtggtc 8330694  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 50989204 - 50989283
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| |||||||    
T  50989204 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtc 50989283  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 51092336 - 51092415
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| |||||||    
T  51092336 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtc 51092415  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 33288136 - 33288212
Alignment:
Q  58 agtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||| ||||||| ||||||||    
T  33288136 agtgatacatagaccaccttaggtggtatgtaccacttgtacacccacacacaattgtgatatgtgtctatgtggtc 33288212  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 38247801 - 38247877
Alignment:
Q  57 tagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggt 133  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||| ||||||    
T  38247801 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 38247877  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 12224186 - 12224105
Alignment:
Q  53 atagtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||| ||| |||||||| ||||| |||||| |||||||    
T  12224186 atagtagtgatacataaaccaccttaggtggcatgtaccatttgtacacccacacacaattttgacaagtgtccttgtggtc 12224105  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 9271111 - 9271190
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||| |||| ||||| |||||| |||||||    
T  9271111 agtagtgatacatagaccaccttagatggcatgtaccacttgtacacccacacataattttgacaagtgtccttgtggtc 9271190  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 54713532 - 54713600
Alignment:
Q  62 atacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgt 130  Q
    ||||||||||||| ||||||||||||||||||||  ||||||| ||| |||| ||||||||||||||||    
T  54713532 atacatagaccacgttaggtggcatgtaccacttgaacatccacacataattatgacatgtgtccatgt 54713600  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 39947333 - 39947262
Alignment:
Q  60 tgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    ||||| ||||||||||||| ||| ||||||||||||||||| ||| | |||||||||| |||||||||||||    
T  39947333 tgatatatagaccaccttaagtgacatgtaccacttatacacccacatacaattgtgatatgtgtccatgtg 39947262  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 36674704 - 36674624
Alignment:
Q  51 aaatagtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtg 131  Q
    |||| ||||||||||||| ||||||||||||| ||| |||||||| ||||  || | | ||||||||||||||||||||||    
T  36674704 aaatggtagtgatacataaaccaccttaggtgacatataccacttgtacactcacatataattgtgacatgtgtccatgtg 36674624  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 8496707 - 8496786
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||| |||||||||||||||||||||||||||||||||||| | || ||| | |||||| ||||| |||||  |||||||    
T  8496707 agtattgatacatagaccaccttaggtggcatgtaccacttgtccacccacatacaattttgacaagtgtctttgtggtc 8496786  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 48034986 - 48034911
Alignment:
Q  59 gtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||||||| ||||||||||||| |||||||||||| |||| ||| | |||||| ||||| |||||| |||||||    
T  48034986 gtgatacataaaccaccttaggtgacatgtaccacttgtacacccacatacaattttgacaagtgtccttgtggtc 48034911  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 29915140 - 29915095
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttataca 100  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||    
T  29915140 agtagtgatacatagaccaccttatgtggcatataccacttgtaca 29915095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 29964293 - 29964248
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttataca 100  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||    
T  29964293 agtagtgatacatagaccaccttatgtggcatataccacttgtaca 29964248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 23004885 - 23004937
Alignment:
Q  174 tggaagtggtacatagtgtatatggagaaaa-ggtgttcatcaaacattatcc 225  Q
    |||||||||| |||||||| ||||||||||| ||||||||| |||||||||||    
T  23004885 tggaagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattatcc 23004937  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 40725869 - 40725917
Alignment:
Q  76 ttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgt 124  Q
    |||||||| ||||||||||| |||||||||| |||||||| ||||||||    
T  40725869 ttaggtggtatgtaccacttgtacatccatatacaattgttacatgtgt 40725917  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 46135531 - 46135599
Alignment:
Q  58 agtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtcc 126  Q
    |||||||||||||||| ||||  ||||||||| || || |||| | | | |||||||||||||||||||    
T  46135531 agtgatacatagaccatcttaaatggcatgtatcatttgtacacctacatacaattgtgacatgtgtcc 46135599  T

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Target: scaffold0533 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 10412 - 10333
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatgtggtc 134  Q
    |||||| ||||||||||||||||||||| ||||||| |||| || || || | | |||| ||||| |||||| |||||||    
T  10412 agtagtaatacatagaccaccttaggtgacatgtactacttgtatattcacatataattttgacaagtgtccttgtggtc 10333  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 52844 - 52877
Alignment:
Q  55 agtagtgatacatagaccaccttaggtggcatgt 88  Q
    |||||||||||||||||||||||||||| |||||    
T  52844 agtagtgatacatagaccaccttaggtgacatgt 52877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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