View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20114_high_11 (Length: 409)
Name: NF20114_high_11
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 31092090 - 31091740
Alignment:
| Q |
18 |
ctgctatgatatggtttaaaggagtatgnnnnnnnnn-ccagtttccattgattcgtgaattttctcatcgacttcaatttagttgtaattttagtaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31092090 |
ctgctatgatatggtttaaaggagtatgaaaaaaaaaaccagtttccattgattcgtgaattttctcatcgacttcaatttagttgtaattttagtaatt |
31091991 |
T |
|
| Q |
117 |
ctttttccacgcctttttgtttttgggcttattccttctttcgtgcattatgatttttgcatcaagcggttgatttaaactctatataagaacatttgca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31091990 |
ctttttccacgcctttttgtttttgggcttattccttctttcgtgcattatgatttttgcatcaagtggttgatttaaactctatataagaacatttgca |
31091891 |
T |
|
| Q |
217 |
catatcatagctacatattatctttcaaaacaatgggatacaaaacaaaaattcaaacaaaggattgtgttaaattgaaagatttaaatcattattcaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31091890 |
catatcatagctacatattatctttcaaaacaatgggatacaaaacaaaaattcaaacaaaggattgtgttaaattgaaagatttaaatcattattcaca |
31091791 |
T |
|
| Q |
317 |
agttcgtgtcttggtaaaagcatgtaaatggtaataaaatagtagtttata |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31091790 |
agttcgtgtcttggtaaaagcatgtaaatggtaataaaatagtagtttata |
31091740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 142 - 403
Target Start/End: Original strand, 31039984 - 31040264
Alignment:
| Q |
142 |
ggcttattccttctttcgtgcattatgatttttgcatcaagcggttgatttaaactctatataagaacatttgcacatatcatagctacat--------- |
232 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039984 |
ggcttaatccttctttcgtgtattatgatttttgcatcaagtggttgatttaaactctatataagaacatttgcacatatcatagctacatgtacaacaa |
31040083 |
T |
|
| Q |
233 |
------attatctttcaaaacaat-----gggatacaaaacaaaaattcaaacaaaggattgtgttaaattgaaagatttaaatcattattcacaagttc |
321 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040084 |
ctacatattatctttcaaaacaatataatgggatacaaaacaaaa-ttcaaataaaggattgtgttaaattgaaagatttaaatcattattcacaagttc |
31040182 |
T |
|
| Q |
322 |
gtgtcttggtaaaagcatgtaaatggtaataaaatagtagtttatagtttattattgtgtacatgtcttagtcttcatctca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||| |||||| |
|
|
| T |
31040183 |
gtgtcttggtaaaagcatgtaaatggtaataaaatagtagtttatagtatattattatgtacgtgtcttggtcttgatctca |
31040264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 31075722 - 31075786
Alignment:
| Q |
240 |
ttcaaaacaatgggatacaaaacaaaaattcaaacaaaggattgtgttaaattgaaagatttaaat |
305 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
31075722 |
ttcaaaacaatgggatacaaaacaaaa-ttcaaactaaggattgtgttaacttgaaagatctaaat |
31075786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 31091446 - 31091409
Alignment:
| Q |
366 |
tagtttattattgtgtacatgtcttagtcttcatctca |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31091446 |
tagtttattattgtgtacatgtcttagtcttgatctca |
31091409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University