View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_high_5 (Length: 568)
Name: NF20114_high_5
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 6273481 - 6272945
Alignment:
| Q |
18 |
cgaacaaatggacttcctcctacacccaataattgaacttctccttgatctttggccatttcaaagtttagatattctaagctcttcacaaaatgtggat |
117 |
Q |
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| T |
6273481 |
cgaacaaatgggcttcctcctacacctaacaattgaacttctccttgatctttggccatttcaacgtttagatattctaagctcttcacaaaatgtcgat |
6273382 |
T |
|
| Q |
118 |
gatgtgaatttcagtttagaagttgtgactctataaaagtggggactttggtatatattgtcataaattagttaggtaaggtttgtgatgtagaattcac |
217 |
Q |
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| T |
6273381 |
g---tgaattttagtttagaagttgtgactctataaaactggggactttggtatatattgtcataaattagttaggtaaggtttgtgatgtagaattcac |
6273285 |
T |
|
| Q |
218 |
cacgtattcattcatgttattactatagtagttacgtaagaccttaactaccaaattgtcaacgagaaatagcattttaaggcacgaatttaacatgaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6273284 |
cacgtattcattcatgttattactatagtagttacgtaagaccttaactaccaaattgtcaacgagaaatagcattttaaggcacgaatttaacatgaaa |
6273185 |
T |
|
| Q |
318 |
attcgactataaattatgttatatagttaatataatttagatatgtgattaatcatgtttattaaatgattaatgagtatgataaggtgtaccaaatcag |
417 |
Q |
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| T |
6273184 |
agtcgactataaattatgttatatagttaatataatttagatatgtgattaatcatgtttattaaatgattaatgagtatgataaggtgtaccaaatcag |
6273085 |
T |
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| Q |
418 |
ttattaatcacatataaagattaaacgtaatataagcaaattaaaaatttagaacnnnnnnnnatatatgttttaataacttagaacttctaattcaata |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6273084 |
ttattaatcacatataaagattaaacgtaatataagcaaattaaaaatttagaacttttttttatatatgttttaataacttagaacttctaattcaata |
6272985 |
T |
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| Q |
518 |
attaaatatataaaatttagaatcatgtagtatgtttcat |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
6272984 |
attaaatatataaaatttagaatcatgtagtatgtttcat |
6272945 |
T |
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