View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_high_6 (Length: 532)
Name: NF20114_high_6
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 1329252 - 1328923
Alignment:
| Q |
11 |
cacagacttgcaattgcgagcattcaataaagataaaataccatgcttacaactggaatggatagaagaacattatgcaatagaaaagagagaagagcat |
110 |
Q |
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| T |
1329252 |
cacagacttgcaattgcgagcattcaataaagataaaataccatgcttacaattggaatggatagaagaacattatgcaatagaaaagagagaagagcgt |
1329153 |
T |
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| Q |
111 |
ggaaatagaaatggtaaagacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaactnnnnnnntctaacagtat |
210 |
Q |
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| T |
1329152 |
ggaaatagaaatggtaaagacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaactaaaaaaatctaacagtat |
1329053 |
T |
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| Q |
211 |
gaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaaaactca |
310 |
Q |
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| T |
1329052 |
gaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaagactca |
1328953 |
T |
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| Q |
311 |
cctttaacacccataccttcaattatttgg |
340 |
Q |
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| T |
1328952 |
cctttaacacccataccttcaattatttgg |
1328923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 348 - 514
Target Start/End: Complemental strand, 1328620 - 1328454
Alignment:
| Q |
348 |
ttgttgttgttgtattcttcaccgagacttagagaggaaaaacaatataaataggaaaatgcctccgttctcttcttgagttgtggactgaatattctat |
447 |
Q |
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| T |
1328620 |
ttgttgttgttgtattcttcaccgagacttagagaggaaaaacaatataaataggaaaatgcctccgttctcttcttgagttgtggactgaatattctat |
1328521 |
T |
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| Q |
448 |
tacatctaaacaaaattctgcgacaaaacatactgctagtgcctgtatatattttattagttaccta |
514 |
Q |
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| T |
1328520 |
tacatctaaacaaaattctgctacaaaacatactgctaatgcctgtatatattttattagttaccta |
1328454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 210 - 340
Target Start/End: Complemental strand, 44187717 - 44187587
Alignment:
| Q |
210 |
tgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaaaactc |
309 |
Q |
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| T |
44187717 |
tgaaagctttaaacttggaatgcaagtacaactaattcttaattcagccaacaggaataagattttttttacaaattgccacctcacaacagaaaggctc |
44187618 |
T |
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| Q |
310 |
acctttaacacccataccttcaattatttgg |
340 |
Q |
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| T |
44187617 |
gcctttaacacccatatcttcaattgtttgg |
44187587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 351 - 466
Target Start/End: Complemental strand, 44187338 - 44187220
Alignment:
| Q |
351 |
ttgttgttgtattcttcaccgagacttagagaggaaaa-acaatataaataggaaaatgcctccgttctcttcttgagttgtggactgaatattctatta |
449 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| | || |||| |||||| ||||||||||||| ||||| |
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| T |
44187338 |
ttgttgttgtattcttcaccaagacttagagaggcaaagacaatataaataggaaaatgcccctattgtcttattgagtcgtggactgaatatcttatta |
44187239 |
T |
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| Q |
450 |
ca--tctaaacaaaattct |
466 |
Q |
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| T |
44187238 |
caattctaaacaaaattct |
44187220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 44187976 - 44187879
Alignment:
| Q |
33 |
ttcaataaagataaaataccatgcttacaactggaatggatagaagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
130 |
Q |
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||||||||||| ||||||| |||||||||| |||||| || ||||||||| ||| ||||||||||||||||| | ||| |||||| |||||||||||| |
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| T |
44187976 |
ttcaataaagacaaaatactatgcttacaattggaatcgaaagaagaacaatatacaatagaaaagagagaaaaacatagaaataaaaatggtaaaga |
44187879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 479
Target Start/End: Complemental strand, 4879118 - 4878991
Alignment:
| Q |
348 |
ttgttgttgttgtattcttcaccgagacttagagaggaaaaacaatataaataggaaaatgcctccgttctcttcttgagttgtggactgaatattctat |
447 |
Q |
| |
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|||||||||||||||||||| | |||||| | ||| ||||||||||||||||| |||| || | |||||||||||||||||| |||||| ||| |
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| T |
4879118 |
ttgttgttgttgtattcttcccaaagactt-----gcaaagacaatataaataggaaa-tgccgccatcgtcttcttgagttgtggaccgaatatcttat |
4879025 |
T |
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| Q |
448 |
taca--tctaaacaaaattctgcgacaaaacata |
479 |
Q |
| |
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|||| ||||||||||||||| | |||||||||| |
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| T |
4879024 |
tacaattctaaacaaaattcttctacaaaacata |
4878991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 4878476 - 4878422
Alignment:
| Q |
76 |
aagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
130 |
Q |
| |
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||||||| ||||||||| |||||||| ||||||| |||||| |||||||||||| |
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| T |
4878476 |
aagaacaatatgcaatatgaaagagagcagagcattgaaataaaaatggtaaaga |
4878422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 44186353 - 44186279
Alignment:
| Q |
265 |
aagaagatttttcttataaattgcgacctcacaacagaaaaactcacctttaacacccataccttcaattatttg |
339 |
Q |
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|||||| ||||||||||||||||| | | |||||| ||| |||| ||||||||||||| | |||||||| |||| |
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| T |
44186353 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttg |
44186279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 26542464 - 26542408
Alignment:
| Q |
74 |
agaagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
130 |
Q |
| |
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| T |
26542464 |
agaagaacatcatacaatagaaaaaagataagagcgtggaaataaaaatggtaaaga |
26542408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 6432874 - 6432798
Alignment:
| Q |
212 |
aaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgc |
288 |
Q |
| |
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||||||||||||||| ||| |||| | |||||| || | |||| ||||||||||||| |||||| |||||||||| |
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| T |
6432874 |
aaagctttaaacttgagatgcaaaaataactaactcctctttcgaccaattggaagaaagtttttcctataaattgc |
6432798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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