View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_low_11 (Length: 486)
Name: NF20114_low_11
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 47 - 481
Target Start/End: Original strand, 13199584 - 13200009
Alignment:
| Q |
47 |
agtgcaaatatgccgaatggaaaaactgaatgtggttcataggcaaaaactgcataaaggaaatgctgttatttttacatcaatggtttaataacaacaa |
146 |
Q |
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| T |
13199584 |
agtgcaaatatgccgaatggaaaaactgaatgtggctcataggcaaaaactgcataaaggaaatgctgttatttttatatcaatggtttaataacaacaa |
13199683 |
T |
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| Q |
147 |
gatacaaactatagctatattaaaaagaaaaatattgattttatcatccaaattaaatggtgcaacttgctaaaatacaaactattgtatccactttcta |
246 |
Q |
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| T |
13199684 |
gatacaaactatagctatattaaaaagaaaaatattggttttatcaaccaaattaaatggtgcaacttgctaaaatacaaactatt---------ttcta |
13199774 |
T |
|
| Q |
247 |
tgttaatacaaaccataagatcggtttggatggaaagcttgtggatcgtcgtctaagtgaagcgtgatggggaaataactacgaacatgtttgcctatga |
346 |
Q |
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| T |
13199775 |
tgttaatacaaaccataagattggtttggatggaaagcttgtggatcgtcgtctaagtgaagcgtgatagggaaataactacgaacatgtttgcctatga |
13199874 |
T |
|
| Q |
347 |
atctgaaatatagagaaaaggaaaatgctaagcttgtgaattgttatttattgataattttgaattaaaatagtgaaatcataaagctaagggaaagaaa |
446 |
Q |
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| T |
13199875 |
atctgaaatatagataaaaggaaaatgctaagcttgtgaattgttatttattgataattttgaattaaaatagtgaaatcataaagctaagggaaagaaa |
13199974 |
T |
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| Q |
447 |
tcgcaaattaatcaattacctggatattcttcgac |
481 |
Q |
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| T |
13199975 |
tcacaaattaatcaattacctggatatttttcgac |
13200009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 30661112 - 30661039
Alignment:
| Q |
47 |
agtgcaaatatgccgaatggaaaaactgaatgtggttcataggcaaaaactgcataaaggaaatgctgttattt |
120 |
Q |
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|||||||| ||||| ||||| |||||||||||||| |||||| ||||||||||||||||| ||| |||||||| |
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| T |
30661112 |
agtgcaaaaatgccaaatgggaaaactgaatgtggctcatagcaaaaaactgcataaaggagatggtgttattt |
30661039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 360
Target Start/End: Complemental strand, 30657583 - 30657474
Alignment:
| Q |
248 |
gttaatacaaaccataagatcggtttggatggaaagcttgtggatcgtcgtctaagtgaagcgtgatggggaaataactacgaacatgtttgcctatgaa |
347 |
Q |
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| T |
30657583 |
gttaatacaaaccataaggttgattaagatggaaagcttctgcatcctcc---aagtgaagagtaatggggaaataactgcaaacatgtttgcatatgaa |
30657487 |
T |
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| Q |
348 |
tctgaaatataga |
360 |
Q |
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|||||||| |||| |
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| T |
30657486 |
tctgaaatgtaga |
30657474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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