View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20114_low_12 (Length: 471)

Name: NF20114_low_12
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20114_low_12
NF20114_low_12
[»] chr4 (20 HSPs)
chr4 (10-246)||(41421320-41421565)
chr4 (231-453)||(41421612-41421843)
chr4 (52-133)||(38011460-38011541)
chr4 (54-133)||(20650160-20650239)
chr4 (52-133)||(44311644-44311724)
chr4 (52-104)||(44136896-44136948)
chr4 (52-103)||(41839652-41839703)
chr4 (48-133)||(29459924-29460008)
chr4 (52-112)||(22065816-22065876)
chr4 (52-103)||(5383821-5383871)
chr4 (52-103)||(44206911-44206961)
chr4 (52-100)||(32338350-32338398)
chr4 (52-103)||(2406489-2406540)
chr4 (52-107)||(2814891-2814946)
chr4 (52-87)||(23096510-23096545)
chr4 (52-118)||(18402689-18402755)
chr4 (52-106)||(29847733-29847786)
chr4 (50-112)||(51267489-51267550)
chr4 (48-112)||(7784798-7784862)
chr4 (77-133)||(35260066-35260122)
[»] chr1 (12 HSPs)
chr1 (52-107)||(18628880-18628935)
chr1 (52-107)||(11871507-11871562)
chr1 (52-107)||(23777121-23777175)
chr1 (52-102)||(26759458-26759508)
chr1 (55-103)||(42241477-42241525)
chr1 (52-103)||(33323983-33324034)
chr1 (52-99)||(26925030-26925077)
chr1 (52-104)||(15309131-15309182)
chr1 (52-107)||(14393241-14393296)
chr1 (56-111)||(25023308-25023363)
chr1 (52-104)||(14167772-14167823)
chr1 (52-104)||(16256559-16256610)
[»] chr2 (7 HSPs)
chr2 (52-118)||(39711499-39711565)
chr2 (52-107)||(9848191-9848246)
chr2 (48-114)||(31055562-31055627)
chr2 (52-133)||(14694907-14694988)
chr2 (52-107)||(5136375-5136429)
chr2 (52-107)||(18481917-18481971)
chr2 (52-106)||(36254665-36254720)
[»] chr6 (8 HSPs)
chr6 (50-133)||(32718096-32718178)
chr6 (48-112)||(1717612-1717676)
chr6 (52-107)||(31946376-31946431)
chr6 (50-234)||(28553993-28554173)
chr6 (53-103)||(6257418-6257468)
chr6 (176-234)||(32718209-32718266)
chr6 (52-105)||(6189844-6189897)
chr6 (52-81)||(30625585-30625614)
[»] chr8 (7 HSPs)
chr8 (56-103)||(18003727-18003774)
chr8 (52-103)||(10659107-10659158)
chr8 (52-133)||(1029536-1029617)
chr8 (52-106)||(14442522-14442577)
chr8 (52-107)||(41566376-41566431)
chr8 (52-96)||(14575298-14575342)
chr8 (52-128)||(13399769-13399845)
[»] chr5 (5 HSPs)
chr5 (52-133)||(19932331-19932411)
chr5 (52-107)||(2770891-2770946)
chr5 (53-103)||(34793296-34793346)
chr5 (52-112)||(3925564-3925623)
chr5 (52-99)||(12466265-12466312)
[»] chr7 (5 HSPs)
chr7 (52-133)||(28002811-28002890)
chr7 (55-103)||(20118175-20118223)
chr7 (56-103)||(5907100-5907147)
chr7 (52-103)||(9957294-9957345)
chr7 (52-118)||(10623528-10623594)
[»] chr3 (5 HSPs)
chr3 (52-108)||(557605-557661)
chr3 (52-107)||(24405227-24405281)
chr3 (48-133)||(35739981-35740064)
chr3 (52-108)||(47720908-47720964)
chr3 (53-108)||(9192326-9192381)
[»] scaffold0003 (1 HSPs)
scaffold0003 (52-104)||(353148-353200)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 41421320 - 41421565
Alignment:
Q  10 agatgaaaagtaaacatatgtaaagaatagttagggat---------gcgtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccc 100  Q
    ||||||||||| ||| ||||||||||| ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41421320 agatgaaaagtgaacgtatgtaaagaacagttagggattcatacatagcgtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccc 41421419  T
Q  101 tgaacaaagcagaaagcaaaagagctctatcgatcgagcattaacaatccaaacaaccgcaaaagactgagacacatgagtaggtaccaaagtggaggca 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41421420 tgaacaaagcagaaagcaaaagagctctattgatcgagcattaacaatccaaacaaccgcaaaagactgagacacatgagtaggtaccaaagtggaggca 41421519  T
Q  201 gccatgacatcttaactcctgcggatctcaacaatagtttcaatca 246  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  41421520 gccatgacatcttaactcctgcggatctcaacagtagtttcaatca 41421565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 231 - 453
Target Start/End: Original strand, 41421612 - 41421843
Alignment:
Q  231 acaatagtttcaatcaaacacattagaacttcaatcgaagcattagtccacta--------accaaataaacccttttgaattaactcgaacataccttt 322  Q
    ||||||||||||||||||||  |||||||| |||||||||||| |||||| ||        |||||||||||| |||||| |||||  ||||||||| ||    
T  41421612 acaatagtttcaatcaaacatgttagaactccaatcgaagcatgagtccaatacgttagtaaccaaataaacctttttgagttaacaggaacataccctt 41421711  T
Q  323 tcgggtttatgaaaccgaacaacatcaagtaggcacaaatcttcaaccaatccacaaatctcttatcaacaacaacataaacat-aaaatacacctcaaa 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41421712 tcgggtttatgaaaccgaacaacatcaagtaggcacaaatcttcaaccaatccacaaatctcttatcaacaacaacataaacataaaaatacacctcaaa 41421811  T
Q  422 accgacaagtcgatggagatttaggttaaacg 453  Q
    ||||||||||||||||||||||||||||||||    
T  41421812 accgacaagtcgatggagatttaggttaaacg 41421843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 38011460 - 38011541
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| ||||| || |||||| ||||    
T  38011460 atggatcgaccgtcaacacggtaacaaaatccaagtgccaacagctccctgaactaagcagcaagcataaaagctctttcga 38011541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 20650239 - 20650160
Alignment:
Q  54 ggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||  ||||||||| ||||    
T  20650239 ggatcgactgccaacacggtaacaaaatccaagtgccaacagctccctgagcaaagcagcaagcgtaagagctctttcga 20650160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 44311644 - 44311724
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    ||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||| |||||| ||||| ||||||||| ||||    
T  44311644 atggatcgaccgccagcacggtatcaaaatccaagtgccatcagctccctgaac-aagcagcaagcataagagctctttcga 44311724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 44136948 - 44136896
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaa 104  Q
    |||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  44136948 atggattgaccgccaacacggtaacaaaatcctagtgccaacagctccctgaa 44136896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 41839652 - 41839703
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  41839652 atggatcgaccgccaacacggtaacaaaatccaagtgtcaatagctccctga 41839703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 29459924 - 29460008
Alignment:
Q  48 gcgtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    ||||||||| |||||||||||||  || || | |||||| ||||||| ||||||||||||||||| ||||| ||||||||| ||||    
T  29459924 gcgtatggaccgaccgccaacacaata-cacattccacgagccaacaactccctgaacaaagcagcaagcataagagctctttcga 29460008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 22065876 - 22065816
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcag 112  Q
    ||||||||||||||||||||||| ||| |||||||| |||||| | |||| ||||||||||    
T  22065876 atggatcgaccgccaacacggtatcaagatccacgtaccaacaacccccttaacaaagcag 22065816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 5383871 - 5383821
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  5383871 atggatcgaccgccaacacggtaac-aaatccaagtgtcaacagctccctga 5383821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 44206911 - 44206961
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  44206911 atggatcgaccgccaacacggtaac-aaatccaagtgccaacagctctctga 44206961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 32338398 - 32338350
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccc 100  Q
    |||||| ||||||||||| |||||||||||||| |||||||| ||||||    
T  32338398 atggattgaccgccaacatggtaacaaaatccaagtgccaaccgctccc 32338350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 2406489 - 2406540
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||||||||||||||| ||| ||| | ||||||||| ||||||||    
T  2406489 atggatcgaccgccaacacggtatcaacatctaagtgccaacacctccctga 2406540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 2814891 - 2814946
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    |||||||||  |||||||||||| ||||||||| ||||||||| ||||||| ||||    
T  2814891 atggatcgattgccaacacggtatcaaaatccaagtgccaacaactccctgcacaa 2814946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 23096510 - 23096545
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgt 87  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23096510 atggatcgaccgccaacacggtatcaaaatccacgt 23096545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 18402689 - 18402755
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagca 118  Q
    |||||||||||||||||||  || |||| |||  ||| ||||| ||||||||||||||||| |||||    
T  18402689 atggatcgaccgccaacacaatatcaaactcctagtgacaacaactccctgaacaaagcagcaagca 18402755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 29847733 - 29847786
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaaca 106  Q
    ||||||||||| ||||||||||| |||| |||| |||||| ||||||||||||||    
T  29847733 atggatcgaccaccaacacggtatcaaa-tccaagtgccagcagctccctgaaca 29847786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 51267550 - 51267489
Alignment:
Q  50 gtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcag 112  Q
    |||||||||||| |||||||| ||||| |||||||||| ||| || | |||||||||||||||    
T  51267550 gtatggatcgactgccaacacagtaac-aaatccacgttccagcaaccccctgaacaaagcag 51267489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 7784862 - 7784798
Alignment:
Q  48 gcgtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcag 112  Q
    |||||||||| ||| |||| |||||||||||||||||||| ||| ||   |||||| ||||||||    
T  7784862 gcgtatggattgacagccagcacggtaacaaaatccacgttccagcaatcccctgagcaaagcag 7784798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 35260066 - 35260122
Alignment:
Q  77 aaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    ||||| || |||||||||||| |||||||||||||| ||||| || |||||| ||||    
T  35260066 aaaattcaagtgccaacagctgcctgaacaaagcagcaagcataaaagctctttcga 35260122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 18628880 - 18628935
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18628880 atggatcgaccgccaacacggtaacaaaatccaagtgccaacagctccctgaacaa 18628935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 11871562 - 11871507
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  11871562 atggatcgaccgctaacacggtaacaaaatccaagtgccaacaactccctgaacaa 11871507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 23777175 - 23777121
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  23777175 atggatcgaccgccaacacggta-caaaatccaagtgccaacagctccctgaacaa 23777121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 26759508 - 26759458
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctg 102  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  26759508 atggatcgaccgccaacacagtaacaaaatccaagtgccaacagctccctg 26759458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 42241525 - 42241477
Alignment:
Q  55 gatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  42241525 gatcgaccgccaacacggtaacaaaatccaagtgccaacaactccctga 42241477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 33324034 - 33323983
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||    
T  33324034 atggatcgaccgccaacacagtaacgaaatccaagtgccaacagctccctga 33323983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 26925030 - 26925077
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctcc 99  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  26925030 atggatcgaccgccaacacagtaacaaaatccaagtgccaatagctcc 26925077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 15309182 - 15309131
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaa 104  Q
    |||||||||||||||||||||| |||||||||| | ||||||| |||||||||    
T  15309182 atggatcgaccgccaacacggt-acaaaatccaagcgccaacaactccctgaa 15309131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 14393296 - 14393241
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    |||||| ||| || ||||||| ||||||||||| | ||||||||||||||||||||    
T  14393296 atggattgactgcaaacacgggaacaaaatccaagcgccaacagctccctgaacaa 14393241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 25023308 - 25023363
Alignment:
Q  56 atcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagca 111  Q
    |||||||||||| | |||| ||||||||| ||||||||| ||| ||||||||||||    
T  25023308 atcgaccgccaatatggtatcaaaatccaagtgccaacaactcactgaacaaagca 25023363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 14167772 - 14167823
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaa 104  Q
    ||||||||||||| ||||||||| | ||||||| ||||||||| |||||||||    
T  14167772 atggatcgaccgctaacacggtatc-aaatccaagtgccaacaactccctgaa 14167823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 16256610 - 16256559
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaa 104  Q
    ||||||||||  |||||||||| |||||||| | |||||||||||||||||||    
T  16256610 atggatcgacaaccaacacggtgacaaaatcaa-gtgccaacagctccctgaa 16256559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 39711499 - 39711565
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagca 118  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  39711499 atggatagaccgccaacacggtaacaaaatccaagtgccaacagctctctgaacaaagcagcaagca 39711565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 9848246 - 9848191
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    ||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||||||||    
T  9848246 atggatcgatcgccaacacggcaacaacatccaagtgccaacaactccctgaacaa 9848191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 31055627 - 31055562
Alignment:
Q  48 gcgtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaa 114  Q
    ||||||||||||||||||||||||||||| |||||||||  ||| || | ||||||| |||||||||    
T  31055627 gcgtatggatcgaccgccaacacggtaac-aaatccacggtccagcaaccccctgaaaaaagcagaa 31055562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 14694907 - 14694988
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    ||||||||||||| |||| |||| |||||| || |||||| ||||||| |||||||||||  ||||| || |||||| ||||    
T  14694907 atggatcgaccgcaaacatggtatcaaaattcaagtgccatcagctccatgaacaaagcaacaagcataaaagctctttcga 14694988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 5136429 - 5136375
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    ||||||||||||| | ||||||||| || |||| ||||||||||||||||||||||    
T  5136429 atggatcgaccgctagcacggtaacgaa-tccaagtgccaacagctccctgaacaa 5136375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 18481917 - 18481971
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    |||||||||||||||||||||||||  |||||| ||||||||| |||||| |||||    
T  18481917 atggatcgaccgccaacacggtaac-gaatccaagtgccaacaactccctaaacaa 18481971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 36254720 - 36254665
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtg-ccaacagctccctgaaca 106  Q
    |||||| ||||||||||||||||||||||| || ||| ||||| ||||||||||||    
T  36254720 atggattgaccgccaacacggtaacaaaattcaagtgcccaacggctccctgaaca 36254665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 32718096 - 32718178
Alignment:
Q  50 gtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||||| || || ||||||||| ||||    
T  32718096 gtatggatcgaccgccaacacggtaacataatctacgtgccaacagcttcctgaac-aagcagcaaacataagagctctttcga 32718178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 1717612 - 1717676
Alignment:
Q  48 gcgtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcag 112  Q
    ||||||||||||||||||| |||||||||||||||||||  ||| || | |||||||||||||||    
T  1717612 gcgtatggatcgaccgccagcacggtaacaaaatccacgatccagcaaccccctgaacaaagcag 1717676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 31946431 - 31946376
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    |||||| | |||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  31946431 atggattgcccgccaacacggtatcaaaatccaagtgccaacagctccctgcacaa 31946376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 234
Target Start/End: Original strand, 28553993 - 28554173
Alignment:
Q  50 gtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcgatcgagcattaacaatc 149  Q
    |||||| ||||| | ||||||||||||||||||||  ||||||||  |||||||| ||||||  ||||| ||||||||| |||||    |||||||| ||    
T  28553993 gtatggttcgactgtcaacacggtaacaaaatccatttgccaacaattccctgaa-aaagcaacaagcataagagctctttcgat----cattaacattc 28554087  T
Q  150 caaacaaccgcaaaagactgagacacatgagtag--gtaccaaagtggaggcagccatgacatcttaactcctgcggatctcaacaa 234  Q
    | ||||  | | ||||||| ||||| |||| |||  | ||||||||| |||||  ||||||| ||| | || |||||||||||||||    
T  28554088 cgaacagtcac-aaagactaagacaaatgaatagccggaccaaagtgaaggcaaacatgacaccttcaatcatgcggatctcaacaa 28554173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 6257468 - 6257418
Alignment:
Q  53 tggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    |||||||| | ||||||||||| ||||||||| ||| ||||||||||||||    
T  6257468 tggatcgatcaccaacacggtatcaaaatccaagtgtcaacagctccctga 6257418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 32718209 - 32718266
Alignment:
Q  176 atgagtaggtaccaaagtggaggcagccatgacatcttaactcctgcggatctcaacaa 234  Q
    |||||||||||||||| ||||||||| ||||||| ||| | ||||| ||||||||||||    
T  32718209 atgagtaggtaccaaa-tggaggcagacatgacaccttgaatcctgtggatctcaacaa 32718266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 6189897 - 6189844
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaac 105  Q
    ||||||||||||||||||||| | |||||| || || |||||| ||||||||||    
T  6189897 atggatcgaccgccaacacggaatcaaaattcaagtaccaacaactccctgaac 6189844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 30625585 - 30625614
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaat 81  Q
    ||||||||||||||||||||||||||||||    
T  30625585 atggatcgaccgccaacacggtaacaaaat 30625614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 18003774 - 18003727
Alignment:
Q  56 atcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18003774 atcgaccgccaacacggtaacaaaatccaagtgccaacagctccctga 18003727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 10659107 - 10659158
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  10659107 atggatcgaccaccaacacggtaacaaaatccaagtgccaacaactccctga 10659158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 1029536 - 1029617
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    |||||||||||||||||| |||| |||||| || ||||||||| ||||||| ||||| ||| ||||| || |||||| ||||    
T  1029536 atggatcgaccgccaacatggtatcaaaattcaagtgccaacaactccctgcacaaaacagtaagcataatagctctttcga 1029617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 14442522 - 14442577
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtg-ccaacagctccctgaaca 106  Q
    |||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  14442522 atggattgaccgccaacacggtaacaaaatccaagtgcccaacggctccctgaaca 14442577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 41566431 - 41566376
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    ||||||||||||||||||||||| ||||||| | ||| ||||||||||||| ||||    
T  41566431 atggatcgaccgccaacacggtatcaaaatctaagtggcaacagctccctgcacaa 41566376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 14575298 - 14575342
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagc 96  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||    
T  14575298 atggatcgaccgccaacacggcaacaacatccaagtgccaacagc 14575342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 13399769 - 13399845
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctct 128  Q
    |||||| |||||||||||| | | || |||||| ||| |||| |||| ||||||||||||| |||| ||| ||||||    
T  13399769 atggattgaccgccaacactgaatcagaatccaagtgtcaaccgctctctgaacaaagcagcaagctaaaaagctct 13399845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 19932331 - 19932411
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    |||||||||||||||||||||||  ||| |||| |||||||||||||||||||||| |||| ||||| || |||||| ||||    
T  19932331 atggatcgaccgccaacacggtatgaaa-tccaagtgccaacagctccctgaacaatgcagcaagcataaaagctctttcga 19932411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 2770891 - 2770946
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    |||||| |||||||||||||||| ||||||||| ||| ||||||||||||| ||||    
T  2770891 atggattgaccgccaacacggtatcaaaatccaagtgtcaacagctccctgcacaa 2770946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 34793296 - 34793346
Alignment:
Q  53 tggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||||||||||||| || |||| || ||||||||||||||||||    
T  34793296 tggatcgaccgccaacacggtgacgaaattcaagtgccaacagctccctga 34793346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 3925623 - 3925564
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcag 112  Q
    ||||||||||| ||||||||||||| |||||||||| ||| || | |||||||||||||||    
T  3925623 atggatcgaccaccaacacggtaac-aaatccacgtaccagcaaccccctgaacaaagcag 3925564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 12466265 - 12466312
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctcc 99  Q
    ||||||||||| ||||||| ||||||||||||| ||||| ||||||||    
T  12466265 atggatcgacctccaacacagtaacaaaatccaagtgccgacagctcc 12466312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 28002890 - 28002811
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    |||||| |||||||||||||||| ||||||| | ||||||  ||||||||||||||||||| ||||| || |||||| ||||    
T  28002890 atggattgaccgccaacacggtatcaaaatctaagtgcca--agctccctgaacaaagcagcaagcataaaagctctttcga 28002811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 20118175 - 20118223
Alignment:
Q  55 gatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  20118175 gatcgaccgccaatacggtaacaaaatccaagtgccaacaactccctga 20118223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 5907147 - 5907100
Alignment:
Q  56 atcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  5907147 atcgaccaccaacacggtaacaaaatccaagtgccaatagctccctga 5907100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 9957345 - 9957294
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctga 103  Q
    ||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||    
T  9957345 atggatcgaccaccaacacggtaacaaaatccaagtgtcaatagctccctga 9957294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 10623594 - 10623528
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagca 118  Q
    |||||||||| |||||||| ||  |||||| ||  |||||||| ||||||||||||||||| |||||    
T  10623594 atggatcgactgccaacacagtgtcaaaatacaattgccaacaactccctgaacaaagcagcaagca 10623528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 557661 - 557605
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaa 108  Q
    ||||||||||||||||||||||| ||| |||||||| |||||| | |||||||||||    
T  557661 atggatcgaccgccaacacggtatcaagatccacgtaccaacaaccccctgaacaaa 557605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 24405281 - 24405227
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaa 107  Q
    ||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||    
T  24405281 atggatcgacctccagcacggtaacaaa-tccaagtgccaacagctccctgaacaa 24405227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 35739981 - 35740064
Alignment:
Q  48 gcgtatggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaagcagaaagcaaaagagctctatcga 133  Q
    |||||||||| ||||||||||||  || ||||||||| ||||||  ||||||||||||||||||  ||||| || |||||| ||||    
T  35739981 gcgtatggattgaccgccaacacattatcaaaatccaagtgcca--agctccctgaacaaagcaacaagcataaaagctctttcga 35740064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 47720964 - 47720908
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaa 108  Q
    |||||||||||||||||| |||| ||| |||||||| |||||| | |||||||||||    
T  47720964 atggatcgaccgccaacaaggtatcaagatccacgtaccaacaaccccctgaacaaa 47720908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 9192326 - 9192381
Alignment:
Q  53 tggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaacaaa 108  Q
    ||||||||| |||||||||||| |||||||||||| ||| |||| || ||||||||    
T  9192326 tggatcgactgccaacacggtatcaaaatccacgtaccagcagccccatgaacaaa 9192381  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 353148 - 353200
Alignment:
Q  52 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctgaa 104  Q
    |||||| |||||| |||| |||||||||||||| |||||||| |||| |||||    
T  353148 atggattgaccgctaacatggtaacaaaatccaagtgccaaccgctctctgaa 353200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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