View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20114_low_13 (Length: 447)
Name: NF20114_low_13
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 3951460 - 3951891
Alignment:
| Q |
1 |
agttttaacaacttagaattgcctctgattctgcttctgttgatttttatttcctcagaagcaatacaggcattatggaagtaaggcattgccagatgga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3951460 |
agttttaacaacttagagttgcctctgattctgcttctgttgatttttatttcctcagaagcaatacaggcattatggaagtaaggcattgccggatgga |
3951559 |
T |
|
| Q |
101 |
attttcgcaagaacatctaactcggaaatgcggccattatgggacttcggtataaatcatgtatgtgagatacgttctgctactcacccatttatagtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3951560 |
attttcgcaagaacatctaactcggaaatgcggccattatgggacttcggtataagtcatgtatgtgagatacattctgctactcacccatttatagtat |
3951659 |
T |
|
| Q |
201 |
aatatctcattatagactctttataacattagtc-ttaattcaatccttcacttactaaaacattgctagttaagtcctaatccaatcatcctcggaaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3951660 |
aatatctcattatagactctttataacattagtctttaattcaatccttcacttactaaaacattgctagttaagtcctaatccaatcatcctcggaaat |
3951759 |
T |
|
| Q |
300 |
accaaatannnnnnngtttcttgttgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttatgtattga |
399 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3951760 |
accaaatatttttttgtttcttgttgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttatgtattga |
3951859 |
T |
|
| Q |
400 |
attttgttgtatatcctaatactacaagattt |
431 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
3951860 |
attttattgtatatcctaatactacaagattt |
3951891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4027416 - 4027184
Alignment:
| Q |
1 |
agttttaacaacttagaattgcctctgattctgcttctgttgatttttatttcctcagaagcaatacaggcattatggaagtaaggcattgccagatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
4027416 |
agttttaacaacttagaattgcctctgattctgcttctgttaatttgcatttcctcagagacaatacatacattctggaagtaaggcattgccatatgga |
4027317 |
T |
|
| Q |
101 |
attttcgcaagaacatctaactcggaaatgcggccattatgggacttcggtataaatcatgtatgtgagatacgttctgctactcacccatttatagtat |
200 |
Q |
| |
|
||| | || |||| |||||||| |||||||| ||||| ||| ||| ||| ||||||||||||||| || ||||||||||||| |||| |||||| | |
|
|
| T |
4027316 |
attgttgctagaaaatctaacttcgaaatgcgtccattttggtactcttgtacaaatcatgtatgtgaagtatgttctgctactcatccatctatagttt |
4027217 |
T |
|
| Q |
201 |
aatatctcattatagactctttataacattagtc |
234 |
Q |
| |
|
| || |||| || ||||| |||||||||||||| |
|
|
| T |
4027216 |
attagctcagtaaagact-attataacattagtc |
4027184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 4013117 - 4012917
Alignment:
| Q |
1 |
agttttaacaacttagaattgcctctgattctgcttctgttgatttttatttcctcagaagcaatacaggcattatggaagtaaggcattgccagatgga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| |||||||||||||||| | ||||| |
|
|
| T |
4013117 |
agttttaatgacttagaattgcctctgattctgcttctgttaattttcatttcgtcagagacaatacaggcattccggaagtaaggcattgcaatatgga |
4013018 |
T |
|
| Q |
101 |
attttcgcaagaacatctaactcggaaatgcggccattatgggacttcggtataaatcatgtatgtgagatacgttctgctactcacccatttatagtat |
200 |
Q |
| |
|
||| | || || ||| |||||| |||||||||| ||||||||||| |||| | |||||||||||| ||| || | |||||||| ||||||||||||| |
|
|
| T |
4013017 |
attgttgctaggacagctaacttagaaatgcggcgattatgggactctagtattattcatgtatgtgaaatatgtgcggctactcatccatttatagtat |
4012918 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
4012917 |
a |
4012917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 3990276 - 3990103
Alignment:
| Q |
11 |
acttagaattgcctctgattctgcttctgttgatttttatttcctcagaagcaatacaggcattatggaagtaaggcattgccagatggaattttcgcaa |
110 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||| ||| ||||||||||||||| |||| ||||||| | || | |
|
|
| T |
3990276 |
acttagaattgcatctgattctgtttctattgatttgcatttcctcagacacaatacagggattctggaagtaaggcatttccagctggaattgttgcta |
3990177 |
T |
|
| Q |
111 |
gaacatctaactcggaaatgcggccattatgggacttcggtataaatcatgtatgtgagatacgttctgctact |
184 |
Q |
| |
|
||| |||||| | |||||||||||||||||||||| || ||||||||||||||||||| | || |||||||| |
|
|
| T |
3990176 |
gaaaatctaaatttgaaatgcggccattatgggactctggcataaatcatgtatgtgagaaatgtgctgctact |
3990103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 4004703 - 4004504
Alignment:
| Q |
1 |
agttttaacaacttagaattgcctctgattctgcttctgttgatttttatttcctcagaagcaatacaggcattatggaagtaaggcattgccagatgga |
100 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||| | |||| ||||||||||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
4004703 |
agttttaacaacttaaaattgtccctgattctgcttctgcttatttgcatttcctcagagacaatacaggcattccggaagtaaggcattgcaagatgga |
4004604 |
T |
|
| Q |
101 |
attttcgcaagaacatctaactcggaaatgcggccattatgggacttcggtataaatcatgtatgtgagatacgttctgctactcacccatttatagtat |
200 |
Q |
| |
|
|| | || ||||||| ||| ||||||| |||||||| | | || |||| ||||||||||||||| ||| || ||| |||||| |||| |||||||| |
|
|
| T |
4004603 |
atgattgctagaacatataattcggaaacacggccattccgagcctctggtacaaatcatgtatgtgaaatatgtgctggtactcatccatatatagtat |
4004504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 420
Target Start/End: Complemental strand, 4004207 - 4004103
Alignment:
| Q |
315 |
gtttcttgttgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttatgtattgaattttgttgtatatc |
414 |
Q |
| |
|
|||||| ||||| ||| |||||| ||| ||| ||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
4004207 |
gtttctagttgactttagttaattggaatttaattttggaccaa-aaactgatatgtgaatttgttttgcaactttatgtattgaatcctgttgtgtatc |
4004109 |
T |
|
| Q |
415 |
ctaata |
420 |
Q |
| |
|
|||||| |
|
|
| T |
4004108 |
ctaata |
4004103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 4012858 - 4012782
Alignment:
| Q |
326 |
aatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttatgtattgaatt |
402 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4012858 |
aatttggttaatttgagttgaattttggaccaagaaactgatatgtgaatttgtattgcaactttatgcattgaatt |
4012782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 4027115 - 4027047
Alignment:
| Q |
324 |
tgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttat |
392 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4027115 |
tgaatttggttaattggagtttaattttggaccaagaaactgatatatgaatttgtattgcaactttat |
4027047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 3803966 - 3803930
Alignment:
| Q |
358 |
agaaactgatatgtgactttgtattgcaactttatgt |
394 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
3803966 |
agaagctgatatgtgaatttgtattgcaactttatgt |
3803930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 13400277 - 13400073
Alignment:
| Q |
1 |
agttttaacaacttagaattgcctctgattctgcttctgttgatttttatttcctcagaagcaatacaggcattatggaagtaaggcattgccagatgga |
100 |
Q |
| |
|
|||| |||||||||| | |||||||| ||| ||||||||| |||| ||||||||||| ||||||||||||| || || ||||||||||||| ||||| |
|
|
| T |
13400277 |
agttataacaacttatatttgcctctaattgagcttctgttaatttacatttcctcagagacaatacaggcattctgaaaataaggcattgccatatgga |
13400178 |
T |
|
| Q |
101 |
attttcgca---agaacatctaactcggaaatgcggccattatgggacttcggtataaatcatgtatgtgagatacgttctgctactcacccatttatag |
197 |
Q |
| |
|
||| | || |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| || |||||||||| || |||||| |
|
|
| T |
13400177 |
attgttgctgctagaacatctaactcggaaatgcggccattatgggactttggtataaataatgtatgtgaaatatgtgctgctactcaatcagttatag |
13400078 |
T |
|
| Q |
198 |
tataa |
202 |
Q |
| |
|
||||| |
|
|
| T |
13400077 |
tataa |
13400073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 13399993 - 13399924
Alignment:
| Q |
323 |
ttgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttat |
392 |
Q |
| |
|
|||||||| |||||| ||||||| || ||||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
13399993 |
ttgaattttgttaattggagtttagttttggaccaagaaactgatatttgaatttgtattgaaactttat |
13399924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University