View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20114_low_17 (Length: 395)
Name: NF20114_low_17
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 28440696 - 28440914
Alignment:
| Q |
1 |
aatcatagactaaatatctttttgctccttcaacacaacaccctttaaaaccaacaagattttggtgctttatatttgctagtgcagccaattctgcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28440696 |
aatcatagactaaatatctttttgctccttcaacacaacaccctttaaaaccaacaagattttggtgctttatatttgatagtgcagccaattctgcaac |
28440795 |
T |
|
| Q |
101 |
aaattccctctctcctctcatagattcagtctcaacagaaagcactttcactgccacaaatgatccatccatgagcctcccctttaaaagtcaaatcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28440796 |
aaattccctctctcctctcatagattcagtctcaacagaaagcactttcactgccacaaatgatccatccatgagcctcccctttaaaagtcaaatcaac |
28440895 |
T |
|
| Q |
201 |
actaatcagttttccatca |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28440896 |
actaatcagttttccatca |
28440914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 243 - 380
Target Start/End: Original strand, 28440939 - 28441076
Alignment:
| Q |
243 |
gctaattttcattagaatgtaatatattatcaccttataaacagagccaaatccaccttgaccaattttgtgatcaaaattattagtagcagatttcaat |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28440939 |
gctaattttcattagaatgtaatatattatcaccttataaacagagccaaatccaccttgaccaattttgtgatcaaaattattagtagcagatttcaat |
28441038 |
T |
|
| Q |
343 |
tggttataagtgaatacacgaaaacttccatcattaat |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28441039 |
tggttataagtgaatacacgaaaacttccatcattaat |
28441076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University