View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20114_low_2 (Length: 752)

Name: NF20114_low_2
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20114_low_2
NF20114_low_2
[»] chr1 (3 HSPs)
chr1 (20-739)||(45935754-45936473)
chr1 (589-739)||(45924375-45924525)
chr1 (599-737)||(26303197-26303335)
[»] chr3 (4 HSPs)
chr3 (243-586)||(15818012-15818339)
chr3 (22-201)||(15817837-15818016)
chr3 (403-586)||(15831266-15831448)
chr3 (34-103)||(43953280-43953349)
[»] chr4 (8 HSPs)
chr4 (332-511)||(5186340-5186523)
chr4 (113-314)||(5164246-5164446)
chr4 (463-525)||(5164621-5164683)
chr4 (332-448)||(5191949-5192064)
chr4 (332-405)||(5164552-5164626)
chr4 (473-525)||(5192063-5192115)
chr4 (113-234)||(5191687-5191807)
chr4 (214-291)||(5186136-5186214)
[»] chr7 (1 HSPs)
chr7 (591-731)||(42240150-42240290)
[»] chr8 (1 HSPs)
chr8 (623-731)||(12631272-12631380)


Alignment Details
Target: chr1 (Bit Score: 684; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 20 - 739
Target Start/End: Original strand, 45935754 - 45936473
Alignment:
Q  20 agcagcagttttatcatggttcccatttgtgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttcagatttcaaggattctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45935754 agcagcagttttatcatggttcccatttgtgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttcagatttcaaggattctt 45935853  T
Q  120 gctggaaagaaagacactaataaaactgaatgatgttttattatatttttcaggtaacatcttgcatttcctatatgattttaatttatatgcgccgtca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45935854 gctggaaagaaagacactaataaaactgaatgatgttttattatatttttcaggtaacatcttgcatttcctatatgattttaatttatatgcgccgtca 45935953  T
Q  220 atgtaaagattttttcactcgtaatttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatgattgattgtgaatttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45935954 atgtaaagattttttcactcgtaatttttatatcattaaaaccatttaactttaacgataactacttctaaactcgtacatatgattgattgtgaattgt 45936053  T
Q  320 tgatagtgtaaattttcctctattcactgattccatatttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaat 419  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45936054 tgatagtgtaaattttcctctactcactgattccatatttttccaatgtaggaaggaaccgaaagttttcggtttgaagagaacatgaaattttgcgaat 45936153  T
Q  420 tcagattatttcctttccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacag 519  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45936154 tctgattatttcctttccctgttagctcaattttacagacttggaacatagaacaggaatggaaaattcaaatacaaaatctaggcaatggctaaaacag 45936253  T
Q  520 catttttattttacattttgaattgacaaatttatgtcagcattgtatatgtatcatatgagtatagattcacaaagcatgtgatgagatatatgttgtg 619  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45936254 catttttattttacattttgaaatgacatatttatgtcagcattgtatatgtatcatatgagtatagattcacaaagcatgtgatgagatatatgttgtg 45936353  T
Q  620 ggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctg 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45936354 ggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctg 45936453  T
Q  720 gtcttgttatcagaattatc 739  Q
    ||||||||||||||||||||    
T  45936454 gtcttgttatcagaattatc 45936473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 589 - 739
Target Start/End: Original strand, 45924375 - 45924525
Alignment:
Q  589 tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45924375 tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca 45924474  T
Q  689 catatccatgatccagatgatgttttccctggtcttgttatcagaattatc 739  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45924475 catatccatgatccagatgatgttttccctggtcttgttatcagaattatc 45924525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 599 - 737
Target Start/End: Original strand, 26303197 - 26303335
Alignment:
Q  599 tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg 698  Q
    |||||||||||||| ||||| || || || || |||||  | ||||| ||||||||||||||||| || | |||||| ||   |||||||||||| ||||    
T  26303197 tgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatg 26303296  T
Q  699 atccagatgatgttttccctggtcttgttatcagaatta 737  Q
    |||| ||||||||||||||||| |||||||||| |||||    
T  26303297 atcctgatgatgttttccctggccttgttatcaaaatta 26303335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 243 - 586
Target Start/End: Original strand, 15818012 - 15818339
Alignment:
Q  243 atttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatgattgattgtgaatttttgatagtgtaaattttcctctat 342  Q
    |||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||                |||||||||||||     
T  15818012 atttttatatcattaaaaccatttaactttaacgataacgtcttctaaactcgtacatatgattgattgt----------------aaattttcctctac 15818095  T
Q  343 tcactgattccatatttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagattatttcctttccctgtt 442  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||    
T  15818096 tcactgattccctatttttccaatgtaggaaggaaccggaagttttcggtttgaagagaacatgaaattttgggaattctgattacttcctttccctgtt 15818195  T
Q  443 agctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaat 542  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15818196 agctcaattttactgacttagaacatagaacaggaatggaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaaa 15818295  T
Q  543 tgacaaatttatgtcagcattgtatatgtatcatatgagtatag 586  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  15818296 tgacatatttatgtcagcattgtatatgtatcatatgagtatag 15818339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 15817837 - 15818016
Alignment:
Q  22 cagcagttttatcatggttcccatttgtgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttcagatttcaaggattcttgc 121  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  15817837 cagcagttttatcgtggttcccatttgtgtcggagttccaaacgcggttgctattcaatcaagcatttagtagaggacttcagatttcaatgattcttgc 15817936  T
Q  122 tggaaagaaagacactaataaaactgaatgatgttttattatatttttcaggtaacatcttgcatttcctatatgatttt 201  Q
    |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15817937 tggaaagaaagacacttacaaaactgaatgatgttttatcatatttttcaggtaacatcttgcatttcctatatgatttt 15818016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 403 - 586
Target Start/End: Original strand, 15831266 - 15831448
Alignment:
Q  403 catgaaattttgcgaattcagattatttcctttccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatcta 502  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| || |||||||||||||||||||    
T  15831266 catgaatttttgggaattctgattatttcctttccctgttagctcaattttactgacttagaacgtagaacaggaatggataattcaaatacaaaatcta 15831365  T
Q  503 ggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtcagcattgtatatgtatcatatgagtatag 586  Q
    |||||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  15831366 ggcaatggct-aaacagcatttttatttttcattttgaaatgacatatttatgtcagcattgtatatgtatcatatgagtatag 15831448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 43953349 - 43953280
Alignment:
Q  34 catggttcccatttgtgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttca 103  Q
    |||||||||||||||| || || ||||||||| || |||||||||| |||||||  || |||||||||||    
T  43953349 catggttcccatttgtttcagaattccaaaccaggctgctattcaaccaagcattcagcagaggacttca 43953280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 332 - 511
Target Start/End: Original strand, 5186340 - 5186523
Alignment:
Q  332 ttttcctctattcactgattccatattttt----ccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagatta 427  Q
    |||||||||  ||||||||||||| |||||    || ||||| | | ||| |||||||||||||||||||||||| | ||| ||| | || |||          
T  5186340 ttttcctctcctcactgattccattttttttcttccgatgtaagcatgaatcgaaagttttcagtttgaagagaataagaattttggggagttctctgat 5186439  T
Q  428 tttcctttccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggc 511  Q
    ||||||| ||||||||||||||||| || ||||| |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  5186440 tttccttaccctgttagctcaatttcactgacttagaacatagaagaggaatggaaaattcaaatacaaaatctaggcaatggc 5186523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 113 - 314
Target Start/End: Original strand, 5164246 - 5164446
Alignment:
Q  113 gattcttgctggaaagaaagacactaataaaactgaatgatgttttattatatttttcaggtaacatcttgcatttcctatatgattttaatttatatgc 212  Q
    ||||||||| ||||||||||||||| | |||||| |||||| | |||| ||| ||||| |||||||| || || ||||  ||| | ||||||||||||||    
T  5164246 gattcttgccggaaagaaagacacttacaaaactaaatgatatgttatcataattttccggtaacattttccacttcc--tattagtttaatttatatgc 5164343  T
Q  213 gccgtcaatgtaaagatttttt-cactcgtaatttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatgattgattg 311  Q
     | | |||| |||||||||||| |||| | |||| | |||||||| ||| ||| |||||| || |||||||||||||||| | |||||||| ||| ||||    
T  5164344 acagccaatttaaagattttttacacttgcaattgtcatatcattgaaatcatttaacttcaatgataactacttctaaagttgtacatataattaattg 5164443  T
Q  312 tga 314  Q
    |||    
T  5164444 tga 5164446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 463 - 525
Target Start/End: Original strand, 5164621 - 5164683
Alignment:
Q  463 gaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt 525  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  5164621 gaacatagaacaggaatggaaaattcaaatacaaaatttaggcaatggctaaaacagcatttt 5164683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 332 - 448
Target Start/End: Original strand, 5191949 - 5192064
Alignment:
Q  332 ttttcctctattcactgattccatatttt-tccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagattattt 430  Q
    |||||||||  ||||||||||| |||||| ||| |||||||||||  ||||||||||||||||||||||||||| ||| ||||| || ||| |||  |||    
T  5191949 ttttcctctcctcactgattccttattttgtccgatgtaggaaggtcccgaaagttttcagtttgaagagaacaagaatttttgggagttctgat--ttt 5192046  T
Q  431 cctttccctgttagctca 448  Q
    ||||||||| ||||||||    
T  5192047 cctttccctattagctca 5192064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 5164552 - 5164626
Alignment:
Q  332 ttttcctctattcactgattccatat-ttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacat 405  Q
    |||||||||  ||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  5164552 ttttcctctcctcactgattccttatatttttcaatgtaggcaggaaccgaaagttttcagtttgatgagaacat 5164626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 473 - 525
Target Start/End: Original strand, 5192063 - 5192115
Alignment:
Q  473 caggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt 525  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  5192063 caggaatggaaaattcatataaaaaatctaggcaatggctaaaacagcatttt 5192115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 5191687 - 5191807
Alignment:
Q  113 gattcttgctggaaagaaa-gacactaataaaactgaatgatgttttattatatttttcaggtaacatcttgcatttcctatatgattttaatttatatg 211  Q
    |||||||||| |||| ||| |||||| | ||||||||||||| | |||| ||||||||| |||||||||||||| ||  | || || |||||||||||||    
T  5191687 gattcttgcttgaaaaaaaagacacttacaaaactgaatgatatgttatcatatttttcgggtaacatcttgcaatt--tttacgagtttaatttatatg 5191784  T
Q  212 cgccgtcaatgtaaagatttttt 234  Q
     ||| ||||| |||||| |||||    
T  5191785 tgccatcaatttaaagacttttt 5191807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 5186136 - 5186214
Alignment:
Q  214 ccgtcaatgtaaagatttttt-cactcgtaatttttatatcattaaaagcatgtaactttaacgataactacttctaaa 291  Q
    |||||||| || ||||||||| |||||| |||| | |||||||||||| ||| |||||| |  ||||||||||||||||    
T  5186136 ccgtcaatttacagattttttacactcgcaattgtcatatcattaaaaccatttaacttcattgataactacttctaaa 5186214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 591 - 731
Target Start/End: Complemental strand, 42240290 - 42240150
Alignment:
Q  591 acaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccaca 690  Q
    ||||||| ||||||||||||||||| ||  | ||||| || || ||  | ||||| |||||||| |||||||| || |||||||||||   |||||||||    
T  42240290 acaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgtagaagagaatccaca 42240191  T
Q  691 tatccatgatccagatgatgttttccctggtcttgttatca 731  Q
    ||| ||||| |||||||||||||| || |||||||||||||    
T  42240190 tattcatgacccagatgatgtttttccaggtcttgttatca 42240150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 623 - 731
Target Start/End: Complemental strand, 12631380 - 12631272
Alignment:
Q  623 gaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctggtc 722  Q
    |||||||| ||||| |||||||| ||||| ||||||  ||| || |||||||| ||||  ||||| ||||| ||||| || |||||||| ||||||||||    
T  12631380 gaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatgtcttccctggtc 12631281  T
Q  723 ttgttatca 731  Q
    |||||||||    
T  12631280 ttgttatca 12631272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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