View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_low_20 (Length: 385)
Name: NF20114_low_20
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 2189275 - 2188910
Alignment:
| Q |
1 |
tagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaaccaactg |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2189275 |
tagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaaccaactg |
2189176 |
T |
|
| Q |
101 |
ccatatctcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2189175 |
ccatatctcataatggccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacat |
2189076 |
T |
|
| Q |
201 |
acaagtggcagctcaacatctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagttaatcatcatcaatagt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2189075 |
acaagtggcagctcaacacctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagtttatcatcatcaataga |
2188976 |
T |
|
| Q |
301 |
tgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaatcaaatggcataac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2188975 |
tgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaagcaaatggcataac |
2188910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 36614167 - 36614532
Alignment:
| Q |
1 |
tagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaaccaactg |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36614167 |
tagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaaccaactg |
36614266 |
T |
|
| Q |
101 |
ccatatctcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacat |
200 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36614267 |
ccatatctcataatggccgtttttagtattggaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaacat |
36614366 |
T |
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| Q |
201 |
acaagtggcagctcaacatctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagttaatcatcatcaatagt |
300 |
Q |
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| T |
36614367 |
acaagtggcagctcaacacctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagtttatcatcatcaataga |
36614466 |
T |
|
| Q |
301 |
tgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaatcaaatggcataac |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
36614467 |
tgaggttgagaactttgccaagggccgagtgtagagtaatcctaatagaaaagcaaatggcataac |
36614532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 36647827 - 36648193
Alignment:
| Q |
1 |
tagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaaccaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
36647827 |
tagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaagcattgagaagaataatcctcggaaaccaactg |
36647926 |
T |
|
| Q |
101 |
ccatatctcataatgg-ccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaaca |
199 |
Q |
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||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36647927 |
ccatatctcataatgatccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaaca |
36648026 |
T |
|
| Q |
200 |
tacaagtggcagctcaacatctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagttaatcatcatcaatag |
299 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36648027 |
tacaagtggcagctcaacacctccccattatcgaggccttctcccaagccaacgaatgtttcaaactcaatcaacagctcaagtttatcatcatcaatag |
36648126 |
T |
|
| Q |
300 |
ttgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaatcaaatggcataac |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36648127 |
atgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaagcaaatggcataac |
36648193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 59 - 269
Target Start/End: Complemental strand, 40224323 - 40224102
Alignment:
| Q |
59 |
ggaaagcaaccattgagaagaataatcatcggaaaccaactgccatatctcataatgg-ccgtttttagaatttgaaa---------gcataacatcttc |
148 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||||||||||||||| | | ||| ||| || ||||||| |||||||| ||| | ||||||| |
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| T |
40224323 |
ggaaagctagcattgagaagaataatcctcggaaaccaactgccacaccccatgatgatccatttttagtatttgaaacttcttcaagcacagcatcttc |
40224224 |
T |
|
| Q |
149 |
aaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagtggcagctcaa-catctccccattatcgaggccttctcccaag |
247 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||| ||||||| |||||||| |
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| T |
40224223 |
agaatcattcctggactcattagagcaaatcactaagaatagttcgaaacatacaagtggcagctcaagcacctccccattattgaggcctcctcccaag |
40224124 |
T |
|
| Q |
248 |
ccaacgaatgtttcaaactcaa |
269 |
Q |
| |
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||| ||||| ||||||||||| |
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| T |
40224123 |
ccagtgaatgcttcaaactcaa |
40224102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 40224007 - 40223928
Alignment:
| Q |
272 |
aacagctcaagttaatcatcatcaatagttgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaa |
351 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
40224007 |
aacaactcaagtttatcatcatcaatagacgagcttgagaactttgccaagggccgagtgcagagtaatcctagtagaaa |
40223928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 40225436 - 40225379
Alignment:
| Q |
3 |
gcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatggg |
60 |
Q |
| |
|
||||||||||| |||||||||| | | ||||||||||||||| | |||||||||||| |
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|
| T |
40225436 |
gcatgattttggtgacttcatgtctggctttggtggaagcagcgtttccaataatggg |
40225379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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