View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20114_low_25 (Length: 312)
Name: NF20114_low_25
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 12358423 - 12358146
Alignment:
| Q |
19 |
tcctatgttttttaagatannnnnnnatcatgatagttatgtttgggattaagtaacagatagcggataaaatagctcatatcacagataagctataata |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
12358423 |
tcctatgttttttaagatatttttttatcatgatagttatgtttgggattaagtaacagatagcggataaaatagctcatatcacggataagctacaata |
12358324 |
T |
|
| Q |
119 |
tattgaatttagtgtttgtaaaatttaagttggacttagttgataaaataaatcaattttcttgttaatattttgtttttcaattaacataatacgagta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12358323 |
tattgaatttagtgtttgtaaaatttaagttggacttagttgataaaataaatcaattttcttgttaatatttagtttttcaattaacataatacgagta |
12358224 |
T |
|
| Q |
219 |
aaattgagaggnnnnnnntaataagttataagtttaaacgccgtttgaaataacttatgaaaaaacactaaactagaagaa |
299 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
12358223 |
aaattgagaggaaaaa---aaaaagttataaatttaaacgctgtttgaaataacttaagaaaaaacactaaactaaaagaa |
12358146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University