View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20114_low_27 (Length: 292)

Name: NF20114_low_27
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20114_low_27
NF20114_low_27
[»] chr5 (1 HSPs)
chr5 (10-292)||(8584847-8585129)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 8584847 - 8585129
Alignment:
Q  10 catcatcattttgggttttgatttccacattggttccgttcgcgatgagcttgatgtcttcgtttgtctctggaatatcacgtcgttgaagcaacttcaa 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8584847 catcatcattttgtgttttgatttccacattggttccgttcgcaatgaacttgatgtcttcgtttgtctctggaatatcacgtcgttgaagcaacttcca 8584946  T
Q  110 ctctcttgcctttgtttcttccaattctttctttgtttgctcaagttctttcttgagggatttgatgcattgtgctaagaagttagcttcttcttttgat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8584947 ctctcttgcctttgtttcttccaattctttctttgtttgctcaagttctttcttgagggatttgatgcattgtgctaagaagttagcttcttcttttgat 8585046  T
Q  210 ccttcaagtttttgctttgtttcttctagctcagctgctaatgctccagctttggattgtgcatgaccagtctcgcttgcttc 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8585047 ccttcaagtttttgctttgtttcttctagctcagctgctaatgctccagctttggattgtgcatgaccagtctcgcttgcttc 8585129  T

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