View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20114_low_28 (Length: 288)

Name: NF20114_low_28
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20114_low_28
NF20114_low_28
[»] chr5 (11 HSPs)
chr5 (118-288)||(27794957-27795128)
chr5 (122-288)||(8300677-8300843)
chr5 (122-288)||(25857919-25858085)
chr5 (119-288)||(33385869-33386038)
chr5 (118-265)||(27766518-27766665)
chr5 (127-270)||(26019490-26019633)
chr5 (236-279)||(42927724-42927767)
chr5 (153-194)||(31641268-31641309)
chr5 (153-194)||(35984378-35984419)
chr5 (211-279)||(19255627-19255695)
chr5 (236-276)||(26072486-26072526)
[»] chr7 (7 HSPs)
chr7 (118-288)||(20535890-20536060)
chr7 (119-288)||(41698634-41698803)
chr7 (214-288)||(37254329-37254403)
chr7 (214-270)||(18530081-18530137)
chr7 (125-195)||(34359569-34359639)
chr7 (122-195)||(23911298-23911371)
chr7 (233-273)||(38652461-38652501)
[»] chr4 (19 HSPs)
chr4 (118-288)||(54483654-54483824)
chr4 (122-288)||(48311568-48311735)
chr4 (118-287)||(2822533-2822701)
chr4 (118-270)||(55726106-55726257)
chr4 (127-279)||(17402190-17402342)
chr4 (118-288)||(4548714-4548884)
chr4 (118-288)||(12697288-12697458)
chr4 (118-187)||(35929314-35929383)
chr4 (214-270)||(5142990-5143046)
chr4 (148-288)||(20002223-20002363)
chr4 (154-279)||(19468396-19468521)
chr4 (118-194)||(41973615-41973691)
chr4 (119-190)||(5790682-5790753)
chr4 (227-274)||(23163140-23163187)
chr4 (119-279)||(24506134-24506294)
chr4 (119-288)||(5147315-5147484)
chr4 (154-195)||(7403423-7403464)
chr4 (118-195)||(8360603-8360680)
chr4 (153-194)||(26184878-26184919)
[»] chr8 (10 HSPs)
chr8 (122-288)||(13879982-13880149)
chr8 (118-274)||(25089863-25090017)
chr8 (119-288)||(29733445-29733613)
chr8 (119-288)||(28415621-28415789)
chr8 (122-288)||(13199604-13199768)
chr8 (127-288)||(20823780-20823941)
chr8 (154-288)||(37433643-37433777)
chr8 (119-288)||(2169816-2169985)
chr8 (122-190)||(10565526-10565594)
chr8 (154-288)||(17698993-17699127)
[»] chr2 (13 HSPs)
chr2 (122-288)||(44022841-44023007)
chr2 (119-288)||(40176147-40176315)
chr2 (148-288)||(33516279-33516418)
chr2 (118-196)||(16364480-16364558)
chr2 (119-288)||(12645013-12645181)
chr2 (127-270)||(38604886-38605029)
chr2 (119-265)||(11000468-11000614)
chr2 (119-288)||(14439232-14439398)
chr2 (238-288)||(15917248-15917298)
chr2 (231-279)||(17765466-17765514)
chr2 (227-274)||(28252305-28252352)
chr2 (230-274)||(15391730-15391774)
chr2 (127-187)||(20240081-20240141)
[»] chr1 (12 HSPs)
chr1 (120-287)||(51994222-51994390)
chr1 (122-225)||(8082353-8082456)
chr1 (118-288)||(17400586-17400757)
chr1 (119-288)||(43387843-43388012)
chr1 (118-190)||(15568246-15568318)
chr1 (122-279)||(16918313-16918470)
chr1 (227-277)||(47623571-47623621)
chr1 (227-288)||(37297994-37298055)
chr1 (118-191)||(49094374-49094447)
chr1 (228-270)||(25560708-25560750)
chr1 (233-270)||(26206820-26206857)
chr1 (211-279)||(13351882-13351950)
[»] chr3 (12 HSPs)
chr3 (119-288)||(48570534-48570703)
chr3 (8-100)||(52545543-52545635)
chr3 (119-268)||(1680638-1680786)
chr3 (118-279)||(7031521-7031680)
chr3 (118-288)||(11203294-11203464)
chr3 (119-288)||(11310694-11310862)
chr3 (119-288)||(30695838-30696007)
chr3 (230-279)||(26771490-26771539)
chr3 (214-288)||(53185032-53185106)
chr3 (119-288)||(33496024-33496192)
chr3 (130-187)||(17102272-17102329)
chr3 (119-191)||(12342819-12342891)
[»] chr6 (10 HSPs)
chr6 (118-288)||(11461889-11462060)
chr6 (122-288)||(17579575-17579741)
chr6 (230-279)||(15959318-15959367)
chr6 (119-288)||(10929799-10929968)
chr6 (154-279)||(14514060-14514185)
chr6 (127-288)||(21630604-21630765)
chr6 (118-195)||(214878-214955)
chr6 (118-288)||(10577727-10577897)
chr6 (153-195)||(18683416-18683458)
chr6 (154-194)||(5734829-5734869)
[»] scaffold0472 (1 HSPs)
scaffold0472 (118-195)||(7398-7475)
[»] scaffold0161 (1 HSPs)
scaffold0161 (127-186)||(6607-6666)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 27794957 - 27795128
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaacc-agtaagatt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27794957 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccaagtaagatt 27795056  T
Q  217 acaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27795057 acaacaaggtcaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaatgtaaagac 27795128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 8300843 - 8300677
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagattaca 219  Q
    |||| |||||| | |||||||| || ||||  |||||||||  |||||||| |||||||||||||||||||||| |  ||||||  |||| || ||||||    
T  8300843 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaaca--cagtcaaaattaca 8300746  T
Q  220 acaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
     |||||| | || ||||||| ||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  8300745 tcaaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 8300677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 25858085 - 25857919
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagattaca 219  Q
    |||| |||||| | |||||||| || ||||  |||||||||  |||||||| |||||||||||||||||||||| |  ||||||  |||| || ||||||    
T  25858085 aaacaaaaatgtaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaaca--cagtcaaaattaca 25857988  T
Q  220 acaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
     |||||| | || ||||||| ||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  25857987 tcaaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 25857919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 33386038 - 33385869
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagatt 216  Q
    ||||||| |||||| | |||||||| |  ||||  |||||||||  |||| ||| |||||||||||||||||||||| |  |||||  || || ||||||    
T  33386038 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcataagacgtgccaaaacaatcacaaaaagattacaac--cctgtcaagatt 33385941  T
Q  217 acaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||| ||| || | || ||||||||||||| ||||||||||||| ||||| |||| ||| ||||  |||||||    
T  33385940 acatcaaagatagtcaatgcccatacatagaagcgggctcgactaccaactatgtgtaccaaaaataaagac 33385869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 265
Target Start/End: Original strand, 27766518 - 27766665
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagat 215  Q
    |||||||  |||||| | |||||||| |  ||||| ||||||||| ||||||||| |||| ||||||||||||||||| |  |||||  || || || ||    
T  27766518 gaagaaataaaaatggaatatattactatgaacattgtaattgttgtagcacaagacgtgtcaaaacaatcacaaaaagattacaac--cctgtcaaaat 27766615  T
Q  216 tacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaa 265  Q
    |||| ||| || | || |||||||| |||| |||||||||||||||||||    
T  27766616 tacatcaaagatagtcaatgcccatgcatagaagcgggctcgaccaccaa 27766665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 270
Target Start/End: Complemental strand, 26019633 - 26019490
Alignment:
Q  127 aaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagt-aagattacaacaagg 225  Q
    ||||||||||||||||||   | || ||||||||||  ||||||||| ||||||||||||||||   ||| | ||| |    || || |||||||||| |    
T  26019633 aaaatgaattatattaccttaagcaacgtaattgttgcagcacaaggtgtgccaaaacaatcac-ggaaagatcaaaattttgtcaatattacaacaaag 26019535  T
Q  226 acaatcgatgcccatacatacaagcgggctcgaccaccaattatg 270  Q
     || |||||||||||||||| ||| || |||||||||||||||||    
T  26019534 tcagtcgatgcccatacataaaagtggactcgaccaccaattatg 26019490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 42927724 - 42927767
Alignment:
Q  236 cccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||    
T  42927724 cccaaacataaaagtgggctcgaccaccaattatgagtatcaaa 42927767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 31641268 - 31641309
Alignment:
Q  153 cgtaattgttatagcacaaggcgtgccaaaacaatcacaaaa 194  Q
    |||||||||||  |||||||| ||||||||||||||||||||    
T  31641268 cgtaattgttaccgcacaaggtgtgccaaaacaatcacaaaa 31641309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 35984419 - 35984378
Alignment:
Q  153 cgtaattgttatagcacaaggcgtgccaaaacaatcacaaaa 194  Q
    |||||||||||  |||||||| ||||||||||||||||||||    
T  35984419 cgtaattgttactgcacaaggtgtgccaaaacaatcacaaaa 35984378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 19255695 - 19255627
Alignment:
Q  211 aagattacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
    ||||||||||| | | || || ||||||| ||||  ||||||||||||||||||| |||||||| ||||    
T  19255695 aagattacaaccaagtcagtcaatgcccaaacatgaaagcgggctcgaccaccaaatatgagtaccaaa 19255627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 26072486 - 26072526
Alignment:
Q  236 cccatacatacaagcgggctcgaccaccaattatgagtatc 276  Q
    ||||||||||  |||||| ||||||||||||||||||||||    
T  26072486 cccatacataagagcgggttcgaccaccaattatgagtatc 26072526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 118 - 288
Target Start/End: Complemental strand, 20536060 - 20535890
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagatta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20536060 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacatccagtaagatta 20535961  T
Q  218 caacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  20535960 caacaaggtcaatcgatgcccaaacatacaagcgggctcgaccaccaattatgagtaccaaatgtaaagac 20535890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 41698803 - 41698634
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattac 218  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  41698803 aagaaactaaaatgaattatattactaataacatcgtaattgttatagtacaaggcgtgtcaaaacaatcacaaaaaacaacaacaatcagtaagattac 41698704  T
Q  219 aacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41698703 aacaaggtcaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaatgtaaagac 41698634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 37254329 - 37254403
Alignment:
Q  214 attacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||||| ||| | |||||||| |||||||||| | |||||||||||||||||||||| ||| ||||  |||||||    
T  37254329 attacatcaaagtcaatcgatacccatacataaatgcgggctcgaccaccaattatgtgtaccaaaattaaagac 37254403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 18530081 - 18530137
Alignment:
Q  214 attacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatg 270  Q
    |||||| ||| || ||||||||| |||||||| ||||||||||||||||||| ||||    
T  18530081 attacatcaaagataatcgatgcacatacataaaagcgggctcgaccaccaactatg 18530137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 34359639 - 34359569
Alignment:
Q  125 ctaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa 195  Q
    |||||||||||||||||||||   ||| ||| |||| |  ||||||||| |||||||||||||||| ||||    
T  34359639 ctaaaatgaattatattaccacagacaacgtgattggtgcagcacaaggtgtgccaaaacaatcacgaaaa 34359569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 23911298 - 23911371
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa 195  Q
    |||| |||||||| |||||||| || ||||   ||||||||  | |||||| ||||||||||||||||||||||    
T  23911298 aaacaaaaatgaaatatattactaaaaacactataattgttgaaacacaagacgtgccaaaacaatcacaaaaa 23911371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 38652501 - 38652461
Alignment:
Q  233 atgcccatacatacaagcgggctcgaccaccaattatgagt 273  Q
    ||||||| ||||||||||||||||||||||||  |||||||    
T  38652501 atgcccaaacatacaagcgggctcgaccaccacatatgagt 38652461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 118 - 288
Target Start/End: Complemental strand, 54483824 - 54483654
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagatta 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  54483824 gaagaaactaaaatgaattatattaccaagaacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacagccagtaagatta 54483725  T
Q  218 caacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  54483724 caacaaggtcaatcgatgcccatacatacaagcggggtcgaccaccaattatgagtaccaaatgtaaagac 54483654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 122 - 288
Target Start/End: Original strand, 48311568 - 48311735
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaa-caacaacaaccagtaagattacaa 220  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  48311568 aaactaaaatgaattatattaccaagaacaccgtaattgttatagcataaggcgtgccaaaacaatcacaaaaaaacagcaacaaccagtaagattacaa 48311667  T
Q  221 caaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
     |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  48311668 taaggtcaatcgatacccatacatacaagcgggctcgaccaccaattatgagtaccaaaagtaaagac 48311735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 118 - 287
Target Start/End: Complemental strand, 2822701 - 2822533
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagatta 217  Q
    ||||||||||||||||| ||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||    
T  2822701 gaagaaactaaaatgaaatatattaacaagaatatcgtaattgttatagcacaaggcgtgccaaaacaatcacgaaaag-aacaacatccagtaagatta 2822603  T
Q  218 caacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaaga 287  Q
    |||||| | ||||||||| ||||||||||||||||||||||||| ||| |||||||| |||| |||||||    
T  2822602 caacaaagtcaatcgatgtccatacatacaagcgggctcgaccatcaactatgagtaccaaaagtaaaga 2822533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 270
Target Start/End: Complemental strand, 55726257 - 55726106
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagatta 217  Q
    |||||||| |||||||||||||||||||  |||| | ||||||||  |||||||||||||||| |||||||||   ||| | ||||| || || | |||     
T  55726257 gaagaaaccaaaatgaattatattaccatgaacaacataattgttgaagcacaaggcgtgccataacaatcac-ggaaagagcaacatcctgtcaaattg 55726159  T
Q  218 caacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatg 270  Q
    |||||  | |||||||||||||| |||  ||||||||||||||||||||||||    
T  55726158 caacatagtcaatcgatgcccatgcatgaaagcgggctcgaccaccaattatg 55726106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 279
Target Start/End: Complemental strand, 17402342 - 17402190
Alignment:
Q  127 aaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagt-aagattacaacaagg 225  Q
    |||||||||||||||||||   ||| ||||||||||| ||||||||| ||||||||||||||||  |||| | |||   || || ||||||||||    |    
T  17402342 aaaatgaattatattaccacggacaacgtaattgttacagcacaaggtgtgccaaaacaatcac-taaaagatcaaagtcctgtcaagattacaaacttg 17402244  T
Q  226 acaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
     || ||||||| ||| |||| |||||||||||||||||||||||||||| ||||    
T  17402243 tcagtcgatgctcatgcataaaagcgggctcgaccaccaattatgagtaccaaa 17402190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 288
Target Start/End: Complemental strand, 4548884 - 4548714
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagat 215  Q
    |||||||| |||||| | |||||||| |  ||||  |||||||||  |||||||| |||| ||||||||||||||||| |  |||||  || || || ||    
T  4548884 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgtcaaaacaatcacaaaaagattacaac--cctgtcaaaat 4548787  T
Q  216 tacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||| ||| || | || ||||||||||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  4548786 tacatcaaagatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 4548714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 12697288 - 12697458
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagat 215  Q
    |||||||| |||||| | |||||||| |  ||||  |||||||||  |||||||| |||||||||||||||||| ||| || ||| |  || || || ||    
T  12697288 gaagaaacaaaaatggaatatattacgataaacactgtaattgttgaagcacaagacgtgccaaaacaatcacataaagactacagc--cctgtcaaaat 12697385  T
Q  216 tacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    || | |||||| | || ||||||||||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  12697386 tatatcaaggatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 12697458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 35929383 - 35929314
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaat 187  Q
    ||||| || |||||||||||||||| || | |||| |||||||| ||||||||||| |||||||||||||    
T  35929383 gaagagacaaaaatgaattatattaacactgacattgtaattgtcatagcacaaggtgtgccaaaacaat 35929314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 5142990 - 5143046
Alignment:
Q  214 attacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatg 270  Q
    |||||| ||| | |||||||| |||||||||| ||||||||||||||||||||||||    
T  5142990 attacatcaaagtcaatcgatacccatacataaaagcgggctcgaccaccaattatg 5143046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 288
Target Start/End: Original strand, 20002223 - 20002363
Alignment:
Q  148 aacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagt-aagattacaacaaggacaatcgatgcccatacatac 246  Q
    |||| ||||||||||  |||||||| ||||||| ||||||||| ||||  | ||| | || || || |||||| ||| | |||||||| | ||||||||     
T  20002223 aacaccgtaattgttgaagcacaagacgtgccataacaatcacgaaaag-atcaagatcctgtcaaaattacatcaaagtcaatcgatactcatacataa 20002321  T
Q  247 aagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||||||||||||||||||| || ||| ||||  |||||||    
T  20002322 aagcgggctcgaccaccaattgtgtgtaccaaaattaaagac 20002363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 19468521 - 19468396
Alignment:
Q  154 gtaattgttatagcacaaggcgtgccaaaacaatcacaa-aaaacaacaacaaccagt-aagattacaacaaggacaatcgatgcccatacatacaagcg 251  Q
    |||||||||  |||||||| ||||||||||||||||||| ||||  |||||  || || ||||||||| ||| || | || ||||||||||||| ||| |    
T  19468521 gtaattgttgaagcacaagacgtgccaaaacaatcacaaaaaaattacaac--cctgtcaagattacatcaaagatagtcaatgcccatacatagaagtg 19468424  T
Q  252 ggctcgaccaccaattatgagtatcaaa 279  Q
    || ||||||||||| |||| ||| ||||    
T  19468423 ggttcgaccaccaactatgtgtaccaaa 19468396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 41973615 - 41973691
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaa 194  Q
    |||||||| |||||| | |||||||| |  ||||  |||||||||  |||||||| |||||||||||||||||||||    
T  41973615 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaa 41973691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 5790753 - 5790682
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcac 190  Q
    ||||||||||||| |||||||||| || | ||| ||||||||| | |  |||||| ||||||||||||||||    
T  5790753 aagaaactaaaataaattatattaacactgacaccgtaattgtcacaatacaaggtgtgccaaaacaatcac 5790682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 23163187 - 23163140
Alignment:
Q  227 caatcgatgcccatacatacaagcgggctcgaccaccaattatgagta 274  Q
    ||||||||||||||||| || |  ||||||||||||||||||||||||    
T  23163187 caatcgatgcccatacaaaccaaagggctcgaccaccaattatgagta 23163140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 279
Target Start/End: Complemental strand, 24506294 - 24506134
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagatt 216  Q
    ||||||| |||||| | |||||||| |  ||||  || ||||||  |||||||| |||||||||||||||||||||| |  |||||  || || || |||    
T  24506294 aagaaacaaaaatggaatatattactatgaacactgtgattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaac--cctgtcaaaatt 24506197  T
Q  217 acaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
    ||| ||| || | || ||| ||||||||| ||||||||||||||||||| |||| ||| ||||    
T  24506196 acatcaaagatagtcaatgtccatacatagaagcgggctcgaccaccaactatgtgtaccaaa 24506134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 5147315 - 5147484
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagt-aagatta 217  Q
    ||||||| |||||| | |||||||| |  |||| ||| ||||||  |||||||| ||||||| |||||||| | |||| ||||| | || |  || ||||    
T  5147315 aagaaacaaaaatggaatatattactatgaacaccgttattgttgaagcacaagacgtgccataacaatca-agaaaagaacaaaaccctgccaaaatta 5147413  T
Q  218 caacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    || ||  | |||||||| |||||||||| |||||| ||| ||||||||||||| ||| ||||  |||||||    
T  5147414 catcagagtcaatcgatacccatacataaaagcggactcaaccaccaattatgtgtaccaaaattaaagac 5147484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 7403423 - 7403464
Alignment:
Q  154 gtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa 195  Q
    |||||||||| ||||||||| |||||||||||||||| ||||    
T  7403423 gtaattgttacagcacaaggtgtgccaaaacaatcacgaaaa 7403464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 8360603 - 8360680
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa 195  Q
    |||||||| |||||| | |||||||| |  ||||| |||||||||  ||||||||  |||||||||||||||| ||||    
T  8360603 gaagaaacaaaaatggaatatattactatgaacattgtaattgttgaagcacaagatgtgccaaaacaatcaccaaaa 8360680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 26184919 - 26184878
Alignment:
Q  153 cgtaattgttatagcacaaggcgtgccaaaacaatcacaaaa 194  Q
    |||||||||||  |||||||| ||||||||||||||||||||    
T  26184919 cgtaattgttaccgcacaaggtgtgccaaaacaatcacaaaa 26184878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 13880149 - 13879982
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaacc-agtaagattacaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13880149 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccaagtaagattacaa 13880050  T
Q  221 caaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  13880049 caaggtcaatcgatacccatacatacaagcggactcgaccaccaattatgagtaccaaatgtaaagac 13879982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 25089863 - 25090017
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagatta 217  Q
    |||||||||||||||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  25089863 gaagaaactaaaatgaattatattactaagaacactgtaattgttatagcacaaggcgtgccaaaacaatcacgaaa--caacaacaaccagtaagatta 25089960  T
Q  218 caacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagta 274  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  25089961 caacaaggtcaatcgatgcccatacatgcaagcgggctcgaccaccaattatgagta 25090017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 29733613 - 29733445
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattac 218  Q
    |||||||||||||||| ||||||||||| || | |||||||||||||||||||| ||||||||||||||||| ||||  ||||||| |||||||||||||    
T  29733613 aagaaactaaaatgaaatatattaccaaaaataccgtaattgttatagcacaagacgtgccaaaacaatcacgaaaag-aacaacatccagtaagattac 29733515  T
Q  219 aacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||| | |||| ||||| ||||||||||||||| |||||||||||| |||||||| |||| ||||||||    
T  29733514 aacaaagtcaattgatgcacatacatacaagcggtctcgaccaccaactatgagtaccaaaagtaaagac 29733445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 28415621 - 28415789
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattac 218  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||  |||||||||||||||| |||||||||   | | | |||||  |  | | |||||    
T  28415621 aagaaaccaaaatgaattatattaccaagaacaacgtaattgttgcagcacaaggcgtgccataacaatcac-ggatagagcaacattctctcaaattac 28415719  T
Q  219 aacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||  | || |||||||||||||||  |||||||||||||||||||||||| ||| ||||  |||||||    
T  28415720 aacatagtcagtcgatgcccatacatgaaagcgggctcgaccaccaattatgtgtaccaaaattaaagac 28415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 288
Target Start/End: Original strand, 13199604 - 13199768
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattacaac 221  Q
    |||| |||||||||||||||| ||  || | ||||||||||  ||||||||||||||| || |||||||  |||  | ||||| || || | ||||||||    
T  13199604 aaacaaaaatgaattatattatcataaataacgtaattgttgaagcacaaggcgtgcctaa-caatcacggaaag-agcaacatcctgtcaaattacaac 13199701  T
Q  222 aaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    || | |||||||||| |||||||| |||||||||||||||||||||||| ||| ||||  |||||||    
T  13199702 aaagtcaatcgatgctcatacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagac 13199768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 288
Target Start/End: Original strand, 20823780 - 20823941
Alignment:
Q  127 aaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagattacaacaag 224  Q
    |||||| | |||||||| || ||||  |||||||||  |||||||| |||||||||||||||||||||| |  ||||||  |||| || |||||| ||||    
T  20823780 aaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaaca--cagtcaaaattacatcaag 20823877  T
Q  225 gacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    || | || ||||||| ||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  20823878 gatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 20823941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 288
Target Start/End: Original strand, 37433643 - 37433777
Alignment:
Q  154 gtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagattacaacaaggacaatcgatgcccatacatacaagcg 251  Q
    |||||||||| |||||||| |||  ||||||||||||||||| |  |||||  || || ||||||||| ||| || | || ||||||||||||| |||||    
T  37433643 gtaattgttaaagcacaagacgtatcaaaacaatcacaaaaagattacaac--cctgtcaagattacatcaaagatagtcaatgcccatacatagaagcg 37433740  T
Q  252 ggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||||||||||||| |||| ||| ||||  |||||||    
T  37433741 ggctcgaccaccaactatgtgtaccaaaaataaagac 37433777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 2169816 - 2169985
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagatt 216  Q
    ||||||| |||||| | |||||||| |  |||| ||||||||||  |||| ||| ||||||| ||||||||| |||| |  |||||  || || || |||    
T  2169816 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcataagacgtgccataacaatcacgaaaagatcacaac--cctgtcaaaatt 2169913  T
Q  217 acaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||| ||| || |||||||| ||||||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  2169914 acatcaaagataatcgatgtccatacataaaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 2169985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 10565594 - 10565526
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcac 190  Q
    |||| |||||||||||||||||||  |||| ||||||||||  |||||||||||| ||| |||||||||    
T  10565594 aaaccaaaatgaattatattaccacgaacaacgtaattgttgaagcacaaggcgttccataacaatcac 10565526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 288
Target Start/End: Original strand, 17698993 - 17699127
Alignment:
Q  154 gtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagtaagattacaacaaggacaatcgatgcccatacatacaagcgg 252  Q
    |||||||||  |||||||  |||||||||||||||||||||| |  |||||  | |  ||||||||| ||| || | || ||| ||||||||| ||||||    
T  17698993 gtaattgttgaagcacaaaacgtgccaaaacaatcacaaaaagattacaacc-ctatcaagattacatcaaagatagtcaatgtccatacatagaagcgg 17699091  T
Q  253 gctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||||||||||| |||| ||| ||||  |||||||    
T  17699092 gctcgaccaccaactatgcgtaccaaaaataaagac 17699127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 122 - 288
Target Start/End: Original strand, 44022841 - 44023007
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattacaac 221  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44022841 aaactaaaatgaattatattaccaagaacatcgtaattgttatagcacaaggcatgccaaaacaatcacaaaaaacaacaacaaccagtaagattacaac 44022940  T
Q  222 aaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||| ||||||||||||||||| |||||||||||| || |||||||||||||| |||| ||||||||    
T  44022941 aaggtcaatcgatgcccatacaaacaagcgggctcaactaccaattatgagtaccaaaagtaaagac 44023007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 40176147 - 40176315
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattac 218  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||    
T  40176147 aagaaactaaaatgaattatattaccaagaacaccgtaattgttatagcacaaggcgtgctaaaacaatcacgaaaaa-aacaacaactagtaagattac 40176245  T
Q  219 aacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||    
T  40176246 aacaaggtcaatcaatgcccatacatacaagcgggctcgaccaccaattatgagttccaaaagtaaagac 40176315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 148 - 288
Target Start/End: Complemental strand, 33516418 - 33516279
Alignment:
Q  148 aacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattacaacaaggacaatcgatgcccatacataca 247  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||  | ||||| |||||||||||||||||| | | |||||||| ||||||||||    
T  33516418 aacaccgtaattgttatagcacaaggcgtgccaaaacaatcacgaaaat-atcaacatccagtaagattacaacaaagtcgatcgatgctcatacataca 33516320  T
Q  248 agcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  33516319 agcgggctcgaccaccaattatgagtaccaaaagtaaagac 33516279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 16364558 - 16364480
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaa 196  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  16364558 gaagaaactaaaatgaattatattactaaaaacaccgtaattgttatagcacaaggcgtgccaaaacaataaaaaaaaa 16364480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 12645013 - 12645181
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattac 218  Q
    ||||||| |||||||||||||||||||  |||| ||||||||||  |||||||||||||||| |||||||||   ||| | ||||| || || | |||||    
T  12645013 aagaaaccaaaatgaattatattaccatgaacaacgtaattgttgaagcacaaggcgtgccataacaatcac-ggaaagagcaacatcctgtcaaattac 12645111  T
Q  219 aacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||  | |||||||| |||||||||  || ||||||||||||||||||||| ||| ||||  |||||||    
T  12645112 aacatagtcaatcgatacccatacatgaaaacgggctcgaccaccaattatgtgtaccaaaattaaagac 12645181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 270
Target Start/End: Complemental strand, 38605029 - 38604886
Alignment:
Q  127 aaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagt-aagattacaacaagg 225  Q
    ||||||||||||||| |||  |||||||||||||||  |||| |||| |||| |||||||||||| |||| | ||| | ||||| || | |||||||| |    
T  38605029 aaaatgaattatattgccacaaacatcgtaattgttgcagcataaggtgtgctaaaacaatcacagaaaa-atcaaaatccagtcaatactacaacaaag 38604931  T
Q  226 acaatcgatgcccatacatacaagcgggctcgaccaccaattatg 270  Q
     |  ||||||||||||||  |||||||| ||||||||||||||||    
T  38604930 tcggtcgatgcccatacaagcaagcgggttcgaccaccaattatg 38604886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 265
Target Start/End: Complemental strand, 11000614 - 11000468
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagt-aagatta 217  Q
    ||||||| |||||| | |||||||| |  |||| ||||||||||  |||||||| |||| || ||||||||||||||  | ||  | || || || ||||    
T  11000614 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaagacgtgtcataacaatcacaaaaag-atcacaatcctgtcaaaatta 11000516  T
Q  218 caacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaa 265  Q
    || ||| || ||||||||| |||||||| |||||||||||||||||||    
T  11000515 catcaaagataatcgatgctcatacataaaagcgggctcgaccaccaa 11000468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 14439232 - 14439398
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattac 218  Q
    ||||||| |||||| | |||||||| |  |||| ||||||||||  |||||||| ||||||| ||||||||| ||||   |  ||||||   || |||||    
T  14439232 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaagacgtgccataacaatcacgaaaag--atcacaaccccaaa-attac 14439328  T
Q  219 aacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    | ||| || ||||||||||||||  || ||||||||||||||||||| |||| ||| ||||  |||||||    
T  14439329 atcaaagataatcgatgcccataattaaaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 14439398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 15917248 - 15917298
Alignment:
Q  238 catacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||||||| |||||||||||||||||||||||||||| ||||  |||||||    
T  15917248 catacataaaagcgggctcgaccaccaattatgagtaccaaaactaaagac 15917298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 17765514 - 17765466
Alignment:
Q  231 cgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||| ||||    
T  17765514 cgatgcccatacataaaagtgggctcgaccaccaactatgagtaccaaa 17765466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 28252305 - 28252352
Alignment:
Q  227 caatcgatgcccatacatacaagcgggctcgaccaccaattatgagta 274  Q
    ||||||||||||||||| || |  ||||||||||||||||||||||||    
T  28252305 caatcgatgcccatacaaaccaaagggctcgaccaccaattatgagta 28252352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 15391730 - 15391774
Alignment:
Q  230 tcgatgcccatacatacaagcgggctcgaccaccaattatgagta 274  Q
    ||||| ||||||||||  |||||| ||||||||||||||||||||    
T  15391730 tcgatacccatacataagagcgggttcgaccaccaattatgagta 15391774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 20240141 - 20240081
Alignment:
Q  127 aaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaat 187  Q
    |||||||||||||||| || | ||| |||||||| | ||||| ||||||| ||||||||||    
T  20240141 aaaatgaattatattaacactgacagcgtaattgctttagcataaggcgtaccaaaacaat 20240081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 120 - 287
Target Start/End: Complemental strand, 51994390 - 51994222
Alignment:
Q  120 agaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaa-caacaacaaccagtaagattac 218  Q
    ||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  51994390 agaaactaaaatgaattatattaccgagaacattgtaattgttaaagcacaaggcgtgccaaaacaatcacaaaaaaacaacagcaaccagtaagattac 51994291  T
Q  219 aacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaaga 287  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  51994290 aacaaggtcaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaaagtaaaga 51994222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 8082353 - 8082456
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattacaac 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  8082353 aaactaaaatgaattatattaccaataacatcgtaattgttatagcataaggtgtgctaaaacaatcacaaaaaacaacaacaactagtaaaattacaac 8082452  T
Q  222 aagg 225  Q
    ||||    
T  8082453 aagg 8082456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 17400586 - 17400757
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcg--tgccaaaacaatcacaaaaaacaacaacaaccagtaagat 215  Q
    |||||||| |||||||||||||||||||  |||| ||||||||||  |||||||||||  || || |||||||||| |||  | |||||  |  | | ||    
T  17400586 gaagaaacaaaaatgaattatattaccatgaacaacgtaattgttgaagcacaaggcgggtgtcataacaatcacagaaag-agcaacatactatcaaat 17400684  T
Q  216 tacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||||||| | |||| ||||| |||||||| ||||||||||||||| |||||||| ||||||||  |||||||    
T  17400685 tacaacaaagtcaatggatgcacatacataaaagcgggctcgaccaacaattatgtgtatcaaaattaaagac 17400757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 43387843 - 43388012
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagatt 216  Q
    ||||||| |||||| | |||||||| || ||||  |||||||||  |||||||| |||||||||||||||||| ||| |  |||||  || || || |||    
T  43387843 aagaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacataaagattacaac--cctgtcaaaatt 43387940  T
Q  217 acaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||| |||||| | || ||||||||||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  43387941 acatcaaggatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 43388012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 15568246 - 15568318
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcac 190  Q
    |||||||| |||||||||||||||||||  |||| |||||||||   |||||||||||||||| |||||||||    
T  15568246 gaagaaaccaaaatgaattatattaccatgaacaacgtaattgtcgaagcacaaggcgtgccataacaatcac 15568318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 279
Target Start/End: Complemental strand, 16918470 - 16918313
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagattaca 219  Q
    |||| |||||| | |||||||| || ||||  |||||||||  |||||||| |||| ||||||||||||||||| |  ||||||  |||| || ||||||    
T  16918470 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgtcaaaacaatcacaaaaagattacaaca--cagtcaaaattaca 16918373  T
Q  220 acaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
     |||||| | || ||||||| ||||| ||||||||||||||||||| |||| ||| ||||    
T  16918372 tcaaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaa 16918313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 47623621 - 47623571
Alignment:
Q  227 caatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatca 277  Q
    ||||||||||||||||| || |  |||||||||||||||||||||||||||    
T  47623621 caatcgatgcccatacaaaccaaagggctcgaccaccaattatgagtatca 47623571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 37298055 - 37297994
Alignment:
Q  227 caatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||||||| | |||||||| |||||||||||||||||||||||| ||| ||||  |||||||    
T  37298055 caatcgatactcatacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagac 37297994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 49094374 - 49094447
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcaca 191  Q
    |||||||| |||||||| |||||||| |  ||||  |||||||||  |||||||| ||||||||||||||||||    
T  49094374 gaagaaacaaaaatgaaatatattactataaacactgtaattgttgaagcacaagacgtgccaaaacaatcaca 49094447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 25560708 - 25560750
Alignment:
Q  228 aatcgatgcccatacatacaagcgggctcgaccaccaattatg 270  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||    
T  25560708 aatcgatgctcatatataaaagcgggctcgaccaccaattatg 25560750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 26206857 - 26206820
Alignment:
Q  233 atgcccatacatacaagcgggctcgaccaccaattatg 270  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  26206857 atgcccatacatagaagcgggctcgaccaccaactatg 26206820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 13351882 - 13351950
Alignment:
Q  211 aagattacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
    ||||||||||| | | || || ||||||| ||||  |||||||||| ||||||||||||||||| ||||    
T  13351882 aagattacaaccaagtcagtcaatgcccaaacatgaaagcgggctcaaccaccaattatgagtaccaaa 13351950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 48570703 - 48570534
Alignment:
Q  119 aagaaactaaaatgaattatatt-accaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagatta 217  Q
    ||||||||||||||||||||||| || || |||| ||||||| |||||| | ||||||||||||||||||||| ||||  | ||||| ||||||||||||    
T  48570703 aagaaactaaaatgaattatatttactaagaacaccgtaattattatagtataaggcgtgccaaaacaatcacgaaaat-atcaacatccagtaagatta 48570605  T
Q  218 caacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  48570604 caacaaagtcaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaaaataaagac 48570534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 52545543 - 52545635
Alignment:
Q  8 gagcacagaggaaaagccttatttggttagattcatactcaaacttatacctgttgatcttctgtttgaatgtgagttttcgcgtcctcttac 100  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52545543 gagcacaaaggaaaagccgtatttgattagattcatactcaaacttataccagttgatcttctgtttgaatgtgagttttcgcgtcctcttac 52545635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 268
Target Start/End: Complemental strand, 1680786 - 1680638
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattac 218  Q
    ||||||| ||||||||||||||||  |  |||| || |||||||  |||||||||||||||| |||||||||| |||  | ||||| || || | |||||    
T  1680786 aagaaacaaaaatgaattatattattatgaacaacgaaattgttgaagcacaaggcgtgccataacaatcacagaaag-agcaacatcctgtcaaattac 1680688  T
Q  219 aacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaatta 268  Q
    ||||| | ||||||||||||||||||| |||||| |||||||||||||||    
T  1680687 aacaaagtcaatcgatgcccatacataaaagcggactcgaccaccaatta 1680638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 7031680 - 7031521
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagt-aagatt 216  Q
    |||||||| |||||| | |||||||| || ||||  |||||||||  |||||||| ||||||||||||||||| ||| |  ||||||  |||| || |||    
T  7031680 gaagaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcac-aaagattacaaca--cagtcaaaatt 7031584  T
Q  217 acaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
    ||| |||||| | || ||||||| ||||| ||||||||||||||||||| |||| ||| ||||    
T  7031583 acatcaaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaa 7031521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 11203294 - 11203464
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagat 215  Q
    |||||||| |||||| | |||||||| |  ||||  |||||||||  |||||||| ||||||| |||||||||| ||| |  ||||||  |||| || ||    
T  11203294 gaagaaacaaaaatggaatatattactataaacactgtaattgttgaagcacaagacgtgccacaacaatcacataaagattacaaca--cagtcaaaat 11203391  T
Q  216 tacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||| |||||| | || ||||||||||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  11203392 tacatcaaggatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 11203464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 11310862 - 11310694
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagtaagattac 218  Q
    ||||||| |||||||||||||||||||  |||| |||||||||   |||| |||| ||| || |||||||||  |||  | ||||| || || | |||||    
T  11310862 aagaaaccaaaatgaattatattaccatgaacaacgtaattgtcgaagcataaggtgtgtcataacaatcactgaaag-agcaacatcctgtcaaattac 11310764  T
Q  219 aacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||||  |  |||||||||||||||||  ||||||| |||||||||||||||| ||| ||||  |||||||    
T  11310763 aacatagttaatcgatgcccatacatgaaagcgggttcgaccaccaattatgtgtaccaaaattaaagac 11310694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 30696007 - 30695838
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagatt 216  Q
    ||||||| |||||| | |||||||| |  ||||| |||||||||  |||||||| |||||||||||||||||||||| |  |||||  || || || |||    
T  30696007 aagaaacaaaaatggaatatattactatgaacattgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaac--cctgtcaaaatt 30695910  T
Q  217 acaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||| ||| || | || |||| |||||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  30695909 acatcaaagatagtcaatgcacatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 30695838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 26771539 - 26771490
Alignment:
Q  230 tcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  26771539 tcgatgctcatacataaaagtgggctcgaccaccaattatgagtatcaaa 26771490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 53185106 - 53185032
Alignment:
Q  214 attacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||||||||| | ||||| ||| ||||| ||| ||||||||||||||| |||||||||||| ||||  |||||||    
T  53185106 attacaacaaagtcaatcaatgtccatatataaaagcgggctcgaccatcaattatgagtaccaaaattaaagac 53185032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 33496024 - 33496192
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagt-aagatta 217  Q
    ||||||| |||||| | |||||||| |  ||||  ||||| |||  |||||||| ||||||||||||||||||||||   |  |||||| || || ||||    
T  33496024 aagaaacaaaaatggaatatattactatgaacactgtaatggttgaagcacaagacgtgccaaaacaatcacaaaaa--gattacaacctgtcaaaatta 33496121  T
Q  218 caacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    || ||| || | || |||| |||||||| ||||||| ||||||||||| |||| ||| ||||  |||||||    
T  33496122 catcaaagatagtcaatgctcatacatagaagcgggttcgaccaccaactatgtgtaccaaaaataaagac 33496192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 17102329 - 17102272
Alignment:
Q  130 atgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaat 187  Q
    ||||||||||||| ||  |||||||||||||||  ||||||||| |||||| ||||||    
T  17102329 atgaattatattaacaccaacatcgtaattgttgcagcacaaggtgtgccataacaat 17102272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 12342891 - 12342819
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcaca 191  Q
    ||||||| |||||| | |||||||| |  ||||  |||||||||  |||||||| ||||||||||||||||||    
T  12342891 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcaca 12342819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 11461889 - 11462060
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaaacaacaacaaccagt-aagatt 216  Q
    |||||||| |||||| | |||||| | |  |||| |||||||| |  |||||||| ||||||| ||||||||| ||||| | ||| | || || || |||    
T  11461889 gaagaaacaaaaatggaatatattgctatgaacaccgtaattgatgaagcacaagacgtgccataacaatcacgaaaaaaatcaaaatcctgtcaaaatt 11461988  T
Q  217 acaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||| ||| | |||||||| |||||||||| |||||||||||||||||||||||| ||| ||||  |||||||    
T  11461989 acatcaaagtcaatcgatacccatacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagac 11462060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 17579741 - 17579575
Alignment:
Q  122 aaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccag-taagattaca 219  Q
    |||| |||||| | |||||||| || ||||  |||||||||  |||||||| |||||||||||||||||||||| |  ||||||  ||| ||| ||||||    
T  17579741 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaaca--cagttaaaattaca 17579644  T
Q  220 acaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
     |||||| | || ||||||| ||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  17579643 tcaaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 17579575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 15959367 - 15959318
Alignment:
Q  230 tcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaa 279  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  15959367 tcgatgcccatacataaaagtgggctcgaccaccaattatgagtaccaaa 15959318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 10929968 - 10929799
Alignment:
Q  119 aagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagatt 216  Q
    ||||||| |||||| | |||||||| |  ||||  |||||||||  |||||||| |||||||||||||||||||||| |  |||||  || || || |||    
T  10929968 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaac--cctgtcaaaatt 10929871  T
Q  217 acaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    ||| ||| || | || ||||||||||||| |||| |||||||||||||| |||| ||| ||||  |||||||    
T  10929870 acatcaaagatagtcaatgcccatacatagaagcaggctcgaccaccaactatgtgtaccaaaaataaagac 10929799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 14514185 - 14514060
Alignment:
Q  154 gtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagattacaacaaggacaatcgatgcccatacatacaagcg 251  Q
    |||||||||  |||||||| |||| ||||||||||||||||| |  ||||||  |||| || |||||| |||||| | || ||||||| ||||| |||||    
T  14514185 gtaattgttgaagcacaagacgtggcaaaacaatcacaaaaagattacaaca--cagtcaaaattacatcaaggatagtcaatgcccaaacatagaagcg 14514088  T
Q  252 ggctcgaccaccaattatgagtatcaaa 279  Q
    |||||||||||||| |||| ||| ||||    
T  14514087 ggctcgaccaccaactatgtgtaccaaa 14514060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 288
Target Start/End: Complemental strand, 21630765 - 21630604
Alignment:
Q  127 aaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagattacaacaag 224  Q
    |||||| | |||||||| |  ||||| |||||||||  |||||||| | |||||||||||||||||||| |  |||||  || || || |||||| |||     
T  21630765 aaaatggaatatattactatgaacattgtaattgttgaagcacaagacatgccaaaacaatcacaaaaagattacaac--cctgtcaaaattacatcaaa 21630668  T
Q  225 gacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    || | || ||||||||||||| ||||||||||||||||||| |||| ||| ||||  |||||||    
T  21630667 gatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagac 21630604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 214878 - 214955
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa 195  Q
    |||||||| |||||| | |||||||| |  ||||  |||||||||  |||||||| ||||||||||||||||||||||    
T  214878 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaa 214955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 288
Target Start/End: Complemental strand, 10577897 - 10577727
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa-acaacaacaaccagt-aagat 215  Q
    |||||||| |||||| | |||||||| |  ||||  | |||||||| |||||||| |||| ||||||||||||||||| |  |||||  || || || ||    
T  10577897 gaagaaacaaaaatggaatatattactatgaacactgcaattgttaaagcacaagacgtgtcaaaacaatcacaaaaagattacaac--cctgtcaaaat 10577800  T
Q  216 tacaacaaggacaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtatcaaatgtaaagac 288  Q
    |||| ||| || | || ||||||||||||| |||||| |||||||||||| |||| ||| ||||  |||||||    
T  10577799 tacatcaaagatagtcaatgcccatacatagaagcggcctcgaccaccaactatgtgtaccaaaaataaagac 10577727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 18683458 - 18683416
Alignment:
Q  153 cgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa 195  Q
    ||||||||||  ||||||||| |||||||||||||||||||||    
T  18683458 cgtaattgttgcagcacaaggtgtgccaaaacaatcacaaaaa 18683416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 5734869 - 5734829
Alignment:
Q  154 gtaattgttatagcacaaggcgtgccaaaacaatcacaaaa 194  Q
    ||||||||||  |||||||| ||||||||||||||||||||    
T  5734869 gtaattgttaccgcacaaggtgtgccaaaacaatcacaaaa 5734829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 7475 - 7398
Alignment:
Q  118 gaagaaactaaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaatcacaaaaa 195  Q
    |||||||| |||||||| |||||||  |  ||||  |||||||||  |||||||| ||||||||||||||||||||||    
T  7475 gaagaaacaaaaatgaaatatattattatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaa 7398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 6666 - 6607
Alignment:
Q  127 aaaatgaattatattaccaataacatcgtaattgttatagcacaaggcgtgccaaaacaa 186  Q
    |||||||||||||||| || ||||| ||||||||||  ||||||||| |||||| |||||    
T  6666 aaaatgaattatattaacactaacaccgtaattgttgcagcacaaggtgtgccacaacaa 6607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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