View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_low_29 (Length: 269)
Name: NF20114_low_29
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 44616292 - 44616053
Alignment:
| Q |
5 |
gagcagcacagaccaatctcaatactcatactagctcttatttctttgagatggatggtaagagtggataacaacaaaataattcaaactaaaattgatt |
104 |
Q |
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| T |
44616292 |
gagctgcacaaaccaatctcaatactcatattagctcttatttctttgagatggatggtaagagtggataacaacaaaataattcaaactaaaattgatt |
44616193 |
T |
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| Q |
105 |
gccattttcacattcaacttaaaggtttcgttacnnnnnnnnnnnnnnnnnngagtgcacaaattacacatgaaaatgtttctacataacaaaactaagc |
204 |
Q |
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| T |
44616192 |
gccattttcacattcaacttaaaggtttcgttac--------aaaaaaatatgagtgcacaaattacacatgaaaatgtttctacataacaaaactaagc |
44616101 |
T |
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| Q |
205 |
ctcgaaaatgaaaatctaagaatccaacagtggtagtcaaatcctatt |
252 |
Q |
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| T |
44616100 |
ctcgaaaatgaaaatctaagaatccaacagtggtagtcaaatcctatt |
44616053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 44625384 - 44625344
Alignment:
| Q |
157 |
gagtgcacaaattacacatgaaaatgtttctacataacaaa |
197 |
Q |
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| T |
44625384 |
gagtgcaaaaattactcatgaacatgtttctacataacaaa |
44625344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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