View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_low_30 (Length: 268)
Name: NF20114_low_30
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 40890973 - 40891204
Alignment:
| Q |
19 |
tatgcaaccttttccacaagcatccttcgaaatctaaattataacatccaaaaatgtcaagagactcaagacgagggcatccatcaagaatagcaagcaa |
118 |
Q |
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| T |
40890973 |
tatgcaaccttttccacaagcttccttcgaaatctaaattataacatccaaaaatgtcaagagactcaagacgagggcatccatcaagaatagcaagcaa |
40891072 |
T |
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| Q |
119 |
gccaacatcactgagagggtctccatgaagaagaagatggagtagcccaggcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttct |
218 |
Q |
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| T |
40891073 |
gccaacatcactgagagggtctccatgaagaacaagatggagtagcccatgcattttttttgcaataataaatgccttatcatcacacgtgaagtgttct |
40891172 |
T |
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| Q |
219 |
ccatccgacatcccatagaatgttagtgattt |
250 |
Q |
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| T |
40891173 |
ccatccgacatcgcatagaatgttagtgattt |
40891204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 30621443 - 30621632
Alignment:
| Q |
22 |
gcaaccttttccacaagcatccttcgaaatctaaattataacatccaaaaatgtcaagagactcaagacgagggcatccatcaagaatagcaagcaagcc |
121 |
Q |
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| T |
30621443 |
gcaacctttcccccaagtttccattgaaatctagattataacatcctataatgtcgagagattcaagaagagggcatccatcaagaatagcaagcaaccc |
30621542 |
T |
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| Q |
122 |
aacatcactgagagggtctccatgaagaagaagatggagtagcccaggcattgtttttgcaataataaatgccttatcatcacacgtgaa |
211 |
Q |
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| T |
30621543 |
aacttcactgagagggtttccatgaatatcaagatggcgtagcccaggcattgtttttgcaataataaatgcctcatcatcacacttgaa |
30621632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 12570380 - 12570339
Alignment:
| Q |
77 |
aagagactcaagacgagggcatccatcaagaatagcaagcaa |
118 |
Q |
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| T |
12570380 |
aagagattcaagacgaggacatccatcaagaatagcaagcaa |
12570339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 13546844 - 13546803
Alignment:
| Q |
77 |
aagagactcaagacgagggcatccatcaagaatagcaagcaa |
118 |
Q |
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| T |
13546844 |
aagagattcaagacgaggacatccatcaagaatagcaagcaa |
13546803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 38285818 - 38285642
Alignment:
| Q |
19 |
tatgcaaccttttccacaagcatccttcgaaatctaaattataacatccaaaaatgtcaagagactcaagacgagggcatccatcaagaatagcaagcaa |
118 |
Q |
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||||||| || | |||||||| ||| |||||||| | |||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||| |
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| T |
38285818 |
tatgcaatctctcccacaagcttccatcgaaatccagattataacatcctgcaatgttaagagattcaagaagagggcatccatcaagaatagcaagcaa |
38285719 |
T |
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| Q |
119 |
gccaacatcactgagagggtctccatgaagaagaagatggagtagcccaggcattgtttttgcaataataaatgcct |
195 |
Q |
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||| ||||| ||||||||| | |||| | ||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
38285718 |
cccatcatcagtgagagggtttttgtgaatatcaagatggcgtagcccaggcattgtctttgcaataataaatgcct |
38285642 |
T |
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