View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_low_33 (Length: 254)
Name: NF20114_low_33
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 13200344 - 13200176
Alignment:
| Q |
43 |
tcataaccaagtgaacaaaacaaaatcatgggaaaagtattacaaagaaacactgaatcaagtaaccgtttcaaatctgttgttgcattagctttgtgtt |
142 |
Q |
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| T |
13200344 |
tcataaccaagtgaacaaaacaaaatcatgggaaaagtgttacaaagaaacactaaatcaagtaaccgtttaaaatctgttgtagcattagctttgtgtt |
13200245 |
T |
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| Q |
143 |
ttggagcaattcatttcaatatttctttgatactctttgctctcttcttcctacttctctcaaaagcac |
211 |
Q |
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| T |
13200244 |
tcggagcaattcatttcaatattgctttgatactctttgctctcttcttcctacctctctcaaaagcac |
13200176 |
T |
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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 30657095 - 30657194
Alignment:
| Q |
112 |
ttcaaatctgttgttgcattagctttgtgttttggagcaattcatttcaatatttctttgatactctttgctctcttcttcctacttctctcaaaagcac |
211 |
Q |
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| T |
30657095 |
ttcaagtctgttgtagcattaactttgtgttttggagcaattcatttcaatcttgctttgatactctttgctatcttcttcctttctttctcaaaagcac |
30657194 |
T |
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