View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_low_36 (Length: 247)
Name: NF20114_low_36
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 25895010 - 25895207
Alignment:
| Q |
19 |
gttttaaatcctcataactgaaaatttatataccaaattagttatttggcctccgtagtccacataaaaatttactgtcaacaaatattagcaagctggc |
118 |
Q |
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| T |
25895010 |
gttttaaatcctcataactgaaaatttatataccaaattagttatttggcctccgtagtccacataaaaatttactgtcaacaaatattagcaagctggc |
25895109 |
T |
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| Q |
119 |
ttacgcagtataaggagaaagcggctgttttgccactggtttcggttgttctgtttctttctgaggagtaatgctaggtacttctgccacaggttctg |
216 |
Q |
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| T |
25895110 |
ttacgcagtataaggagaaagcggctgttttgccactagtttcggttgttctgtttctttctgaggagtgatgctaggtacttctgccactggttctg |
25895207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 25895194 - 25895245
Alignment:
| Q |
149 |
tgccactggtttcggttgttctgtttctttctgaggagtaatgctaggtact |
200 |
Q |
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| T |
25895194 |
tgccactggttctggttgttctgtttctttctgaggggcaatgctaggtact |
25895245 |
T |
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