View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20114_low_38 (Length: 243)

Name: NF20114_low_38
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20114_low_38
NF20114_low_38
[»] chr8 (11 HSPs)
chr8 (1-225)||(13879738-13879962)
chr8 (1-222)||(25090052-25090273)
chr8 (67-222)||(2529617-2529772)
chr8 (62-222)||(2170066-2170226)
chr8 (73-222)||(43270187-43270336)
chr8 (62-222)||(17699208-17699368)
chr8 (61-221)||(42177820-42177979)
chr8 (1-222)||(37433797-37434018)
chr8 (81-182)||(13199868-13199969)
chr8 (1-34)||(17699147-17699180)
chr8 (1-222)||(20823961-20824182)
[»] chr5 (8 HSPs)
chr5 (1-225)||(27795148-27795372)
chr5 (1-205)||(18359361-18359565)
chr5 (1-222)||(10774116-10774337)
chr5 (1-227)||(27766708-27766934)
chr5 (1-222)||(33385628-33385849)
chr5 (62-222)||(25857678-25857838)
chr5 (1-222)||(8300436-8300657)
chr5 (73-139)||(26019323-26019389)
[»] chr4 (11 HSPs)
chr4 (1-225)||(54483410-54483634)
chr4 (4-225)||(48311758-48311984)
chr4 (1-222)||(2822291-2822512)
chr4 (1-207)||(20002383-20002589)
chr4 (9-222)||(8360773-8360986)
chr4 (73-222)||(55725847-55725996)
chr4 (1-222)||(4548473-4548694)
chr4 (69-144)||(17402018-17402093)
chr4 (1-222)||(12697478-12697699)
chr4 (77-172)||(5148402-5148497)
chr4 (70-183)||(23162925-23163038)
[»] chr1 (3 HSPs)
chr1 (6-225)||(51993979-51994198)
chr1 (1-222)||(43388032-43388253)
chr1 (62-125)||(37297864-37297927)
[»] chr2 (8 HSPs)
chr2 (1-225)||(40176335-40176558)
chr2 (1-222)||(33516038-33516259)
chr2 (73-222)||(14439490-14439639)
chr2 (62-221)||(11000205-11000364)
chr2 (67-222)||(12645267-12645422)
chr2 (1-48)||(44023027-44023074)
chr2 (74-125)||(17765313-17765364)
chr2 (73-143)||(15917390-15917460)
[»] chr3 (13 HSPs)
chr3 (1-222)||(48570293-48570514)
chr3 (1-222)||(36801329-36801550)
chr3 (61-206)||(19890403-19890548)
chr3 (1-222)||(33496212-33496433)
chr3 (1-182)||(7031311-7031492)
chr3 (73-227)||(11310444-11310602)
chr3 (70-119)||(26771346-26771395)
chr3 (62-182)||(29524039-29524159)
chr3 (67-125)||(16178679-16178737)
chr3 (1-182)||(11203484-11203665)
chr3 (1-34)||(29524187-29524220)
chr3 (1-34)||(30695785-30695818)
chr3 (62-182)||(12342519-12342639)
[»] chr6 (10 HSPs)
chr6 (61-221)||(11462138-11462298)
chr6 (1-221)||(20883288-20883505)
chr6 (1-206)||(10577502-10577707)
chr6 (62-222)||(14513811-14513971)
chr6 (71-181)||(14373286-14373396)
chr6 (1-143)||(10929637-10929779)
chr6 (1-222)||(17606588-17606809)
chr6 (62-222)||(17579335-17579495)
chr6 (1-222)||(215068-215289)
chr6 (67-182)||(21630403-21630518)
[»] chr7 (3 HSPs)
chr7 (1-221)||(37254423-37254643)
chr7 (61-221)||(25619184-25619344)
chr7 (62-222)||(18530236-18530396)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13879962 - 13879738
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879962 caccacagggtatttgattttactttatctaacaactgtgatagagaactattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 13879863  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  13879862 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttcaagactccagcatattgaataaattgcataaaatgatccaagggagcatgagaatc 13879763  T
Q  201 tacccctactacaccaagccaatcc 225  Q
    |||||||||||||||||||||||||    
T  13879762 tacccctactacaccaagccaatcc 13879738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25090052 - 25090273
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  25090052 caccacaaggaatttgattttactttatctaacaactgtggtagagaaccatcacggccacgaaataacctgtcattccgttcattccatataacccaaa 25090151  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||| | |||| |||||||||||||||||||||||||||  |  || || |||||||    
T  25090152 cacactgaagccaaatcaagtggaagagagatcgacgcgatttcaaggcaccaatatattgaataaattgcataaaatgatctgatagaacatgagaatc 25090251  T
Q  201 tacccctactacaccaagccaa 222  Q
    ||||||| ||||||||||||||    
T  25090252 taccccttctacaccaagccaa 25090273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 2529617 - 2529772
Alignment:
Q  67 aacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataa 166  Q
    ||||| ||||||||||||||||| | ||||||||| ||||| ||||||||||| ||||| |  || ||||| ||||| ||| ||||  |||||| |||||    
T  2529617 aacctgtcattccgttcattccataaaacccaaacgcactgcagccaaatcaaatgaaataaggatcgacgggatttcaagcctcctgcatattcaataa 2529716  T
Q  167 attgcataaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
    ||||||||||||||||  |   |||| |||||||||| ||| | ||||||||||||    
T  2529717 attgcataaaatgatctgaaatagcaagagaatctactccttcgacaccaagccaa 2529772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 2170066 - 2170226
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattg 161  Q
    |||| ||| ||||||||||||| ||||| | |||| || ||||||||||||||||||| ||||| |  || ||||| ||||| ||| | ||  ||||||     
T  2170066 gaaataacatatcattccgttctttccataaaaccgaagcacactgaagccaaatcaaatgaaataaggatcgacgagatttcaagccacctgcatattc 2170165  T
Q  162 aataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
    ||||||||||| |||||||||  ||  |||| |||||||||||||| | ||||||||||||    
T  2170166 aataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaa 2170226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 43270187 - 43270336
Alignment:
Q  73 tcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgca 172  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||| || ||||| |  || ||||| ||||| ||| | ||  |||||| |||||||||||    
T  43270187 tcattccgttcattccataacaccgaaacacactgaagccaaattaaatgaaataaggaacgacgagatttcaagccacctgcatattcaataaattgca 43270286  T
Q  173 taaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
     |||||||||  ||  |||| |||||||||||||| | ||||||||||||    
T  43270287 caaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaa 43270336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 17699208 - 17699368
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattg 161  Q
    |||| ||| ||||||||||||| ||||| | |||| | |||||||||| ||||||||| ||||| |  || || ||| |||| ||| | ||  ||||||     
T  17699208 gaaataacatatcattccgttctttccataaaaccgagacacactgaaaccaaatcaaatgaaataaggatcggcgcaatttcaagccacctgcatattc 17699307  T
Q  162 aataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
    ||||||||||| |||||||||  ||  |||| |||||||||||||| | ||||||||||||    
T  17699308 aataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaa 17699368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 42177979 - 42177820
Alignment:
Q  61 cgaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatatt 160  Q
    ||||| ||||| |||||| ||||| |||||| |||  |||||||||||||||||||||| ||||| | ||| ||||| ||||| ||| | ||  ||||||    
T  42177979 cgaaataacctgtcattctgttcagtccaaaaaact-aaacacactgaagccaaatcaaatgaaataaagatcgacgggatttcaagccacctgcatatt 42177881  T
Q  161 gaataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagcca 221  Q
      |||||||||| |||||||||  ||  | || |||||||||||||| | |||||||||||    
T  42177880 cgataaattgcacaaaatgatctgagataacatgagaatctaccccttcgacaccaagcca 42177820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37433797 - 37434018
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||||||||||||||||| ||||| | |||| | |    
T  37433797 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttctttccataaaaccgaga 37433896  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||| |||| |||||| || ||||| |  || ||||||||||| ||  | ||  |||||| ||||||||||| |||||||||  ||  |||| |||||||    
T  37433897 cacattgaaaccaaattaaatgaaataaggatcgacgcgatttcaaaccacccgcatattcaataaattgcacaaaatgatctgagatagcatgagaatc 37433996  T
Q  201 tacccctactacaccaagccaa 222  Q
     |||||| | |||| |||||||    
T  37433997 gaccccttcgacacaaagccaa 37434018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 13199868 - 13199969
Alignment:
Q  81 ttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatga 180  Q
    ||||||||| | ||| ||||||||||| ||||||||||| || || |  || |||||  |||| ||| ||||  |||||| |||||||||||||||||||    
T  13199868 ttcattccataaaacgcaaacacactgcagccaaatcaaatggaataaggatcgacggaatttcaagcctcctgcatattcaataaattgcataaaatga 13199967  T
Q  181 tc 182  Q
    ||    
T  13199968 tc 13199969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17699147 - 17699180
Alignment:
Q  1 caccacagggtatttgattttactttatctaaca 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  17699147 caccacaaggtatttgattttactttatctaaca 17699180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20823961 - 20824182
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||| ||   ||| || |||||  | |||     |||| ||||||||||||||||| ||||| | |||| | |    
T  20823961 caccacaaggtatttgattttactttatctagcaatagtggtatagaactgtgacgattctgaaataacctatcattccgttctttccataaaaccgaga 20824060  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    || | |||| ||||||||| ||||| |  ||  |||||||||| ||| | ||  |||||| ||||||| ||| ||| |||||  ||  || | |||||||    
T  20824061 catattgaaaccaaatcaaatgaaataatgattgacgcgatttcaagccacctgcatattcaataaatcgcacaaagtgatctgagatagtatgagaatc 20824160  T
Q  201 tacccctactacaccaagccaa 222  Q
     |||||| | ||||||||||||    
T  20824161 gaccccttcgacaccaagccaa 20824182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27795148 - 27795372
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27795148 caccacagggtatttgattttactttatctaacaactgtgatagagaactattacggccacgaaacaacctatcattccgttcattccaaacaacccaaa 27795247  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||    
T  27795248 cacactgaagccaaatcaaatgaaagagagaccgacgcgatttcaagactccagcatattgaataaattgcataagatgatccaagggagcatgagaatc 27795347  T
Q  201 tacccctactacaccaagccaatcc 225  Q
    |||||||||||||||||| ||||||    
T  27795348 tacccctactacaccaagtcaatcc 27795372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 18359565 - 18359361
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    |||||||  |||| ||||||||||||||||||||   ||| || |||||  | ||||   ||||| ||||| ||||||||||||||||| | ||||||||    
T  18359565 caccacaaagtatgtgattttactttatctaacaatagtggtatagaactttgacggttccgaaataacctgtcattccgttcattccataaaacccaaa 18359466  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||||||||||||| ||||||| ||| ||||| ||||| ||| | ||  | |||| ||||||||||| |||||||||  ||  |||| |||||||    
T  18359465 cacactgaagccaaatcaaatgaaagaaagatcgacgagatttcaagccacctgcgtatttaataaattgcacaaaatgatctgagatagcatgagaatc 18359366  T
Q  201 taccc 205  Q
    |||||    
T  18359365 taccc 18359361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10774116 - 10774337
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||| ||||||||||||| ||||| | |||| | |    
T  10774116 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacttatcattccgttctttccataaaaccgaga 10774215  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||| ||||||||| ||||| |  || ||||||||||| ||| | ||  |||||| ||||||||||| |||||||||  ||  |||| |||||||    
T  10774216 cacactgaaaccaaatcaaatgaaataaggatcgacgcgatttcaagccacctgcatattcaataaattgcacaaaatgatctcagatagcatgagaatc 10774315  T
Q  201 tacccctactacaccaagccaa 222  Q
    ||||||| | ||||||||||||    
T  10774316 taccccttcgacaccaagccaa 10774337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27766708 - 27766934
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| |||||| |||||||||||||||||||   |||||| |||||  | |||     |||| ||||||||||||||||| ||||| | |||| | |    
T  27766708 caccacaaggtattcgattttactttatctaacaatagtgatatagaactttgacgattctgaaataacctatcattccgttctttccataaaaccgata 27766807  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||| |||| ||||||||| ||||| |  || ||||||||||| || || ||  |||||| ||||||||||| | |||||||  |   || | |||||||    
T  27766808 cacattgaaaccaaatcaaatgaaataatgatcgacgcgatttcaaaacacctgcatattcaataaattgcacacaatgatctgaaatagtatgagaatc 27766907  T
Q  201 tacccctactacaccaagccaatcctg 227  Q
     |||||| | |||||||||||| ||||    
T  27766908 gaccccttcgacaccaagccaagcctg 27766934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33385849 - 33385628
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| |||||||||||| |||| ||||| | || | | |    
T  33385849 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattctgttctttccataaaatcgaga 33385750  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||| ||||||||| ||||| |  || || |||||||| ||| | || ||||| | ||||||||||| |||||||||  ||  |||| |||||||    
T  33385749 cacactgaaaccaaatcaaatgaaataaggatcggcgcgatttcaagccacctacataatcaataaattgcacaaaatgatctgagatagcatgagaatc 33385650  T
Q  201 tacccctactacaccaagccaa 222  Q
    ||| | | | ||||||||||||    
T  33385649 tactcattcgacaccaagccaa 33385628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 25857838 - 25857678
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattg 161  Q
    |||| ||||||||||||||||| ||||| | |||| | ||||| |||| ||||||||| ||||| |  || ||||||||||| ||| | ||  ||||||     
T  25857838 gaaataacctatcattccgttctttccataaaaccgagacacattgaaaccaaatcaaatgaaataatgatcgacgcgatttcaagccacctgcatattc 25857739  T
Q  162 aataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
    ||||||||||| ||| |||||  ||  || | ||||||| |||||| | ||||||||||||    
T  25857738 aataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaa 25857678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8300657 - 8300436
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||| ||   ||| || |||||  | |||   | |||| ||||||||||||||||| ||||| | || | | |    
T  8300657 caccacaaggtatttgattttactttatctagcaatagtggtatagaactgtgacgattatgaaataacctatcattccgttctttccataaaatcgaga 8300558  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||| |||| ||||||||| ||||| |  || ||||| ||||| ||| | ||  |||||| ||||||||||| ||| |||||  ||  || | |||||||    
T  8300557 cacattgaaaccaaatcaaatgaaataatgatcgacgtgatttcaagccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatc 8300458  T
Q  201 tacccctactacaccaagccaa 222  Q
     |||||| | ||||||||||||    
T  8300457 gaccccttcgacaccaagccaa 8300436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 26019389 - 26019323
Alignment:
Q  73 tcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcg 139  Q
    ||||| ||||||||||| | ||| ||||||||||||||||||||||| ||||| | ||| |||||||    
T  26019389 tcatttcgttcattccacaaaactcaaacacactgaagccaaatcaaatgaaataaagatcgacgcg 26019323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 54483634 - 54483410
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54483634 caccacaaggtatttgattttactttatctaacaactgtgatagagaaccattacggccacaaaacaacctatcattccgttcattccaaataacccaaa 54483535  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  54483534 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttcaaggcaccagcatattgaataaattgcataaaatgatcaaagggagcatgagaatc 54483435  T
Q  201 tacccctactacaccaagccaatcc 225  Q
    |||||||||||||||||| ||||||    
T  54483434 tacccctactacaccaagtcaatcc 54483410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 48311758 - 48311984
Alignment:
Q  4 cacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaacac 103  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48311758 cacagagtatttgattttactttatctaacaactgtgatagagaaccattacggccacaaaacaacctatcattccgttcattccaaataacccaaacac 48311857  T
Q  104 actgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatcc-----aagggagcaggagaa 198  Q
    |||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||     ||||||||| |||||    
T  48311858 actgaagccaaatcaagtgaaagagagaccgacgcgatttcaaggcaccagcatattgaataaattgcataaaatgatccaagctaagggagcatgagaa 48311957  T
Q  199 tctacccctactacaccaagccaatcc 225  Q
    ||||||||| |||||||||||||||||    
T  48311958 tctaccccttctacaccaagccaatcc 48311984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2822512 - 2822291
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    |||||||| | ||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||    
T  2822512 caccacagagaatttgatttcactttatctaacaactgtggtagagaacaattacggccacgaaacaacctgtcattccgttcattccataaaacccaaa 2822413  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||||||||||||||||||||| |||| ||| ||||||||||| ||| | ||  ||||||||||||||||||||||||||||| | ||||||||||||||    
T  2822412 cacactgaagccaaatcaagtggaagaaagatcgacgcgatttcaagccacctgcatattgaataaattgcataaaatgatccgaaggagcaggagaatc 2822313  T
Q  201 tacccctactacaccaagccaa 222  Q
    |||||||   ||||||||||||    
T  2822312 tacccctttaacaccaagccaa 2822291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 20002383 - 20002589
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||| ||||||||||||||||||||   ||| || |||||  | || |   ||||| ||||| ||||||||||| ||| | | ||||||||    
T  20002383 caccacaaggtatgtgattttactttatctaacaatagtggtatagaactttgacagttccgaaataacctgtcattccgttccttcaataaaacccaaa 20002482  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||||||||||||| ||||| | ||| |||||  |||| ||| | || ||||||| ||||||||||| |||||||||  ||  |||| |||||||    
T  20002483 cacactgaagccaaatcaaatgaaataaagatcgacggaatttcaagccacctacatattcaataaattgcacaaaatgatctgagatagcatgagaatc 20002582  T
Q  201 tacccct 207  Q
    |||||||    
T  20002583 tacccct 20002589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 8360773 - 8360986
Alignment:
Q  9 ggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaacacactga 108  Q
    ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||||||||||||||||| ||||| | |||| | |||||||||    
T  8360773 ggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttctttccataaaaccgagacacactga 8360872  T
Q  109 agccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatctaccccta 208  Q
    | ||||||||| ||||| || || ||||||||||| ||  | ||  |||||| ||||||||| | |||||||||  ||  |||| ||||||||||||||     
T  8360873 aaccaaatcaaatgaaatagggatcgacgcgatttcaaaccacctgcatattcaataaattgaacaaaatgatctgagatagcatgagaatctacccctt 8360972  T
Q  209 ctacaccaagccaa 222  Q
    | ||||||||||||    
T  8360973 cgacaccaagccaa 8360986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 55725996 - 55725847
Alignment:
Q  73 tcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgca 172  Q
    ||||||||||| ||||| | |||||||||||| || ||||||||||| ||||| |  || ||| | ||||| ||| ||||  |||||| |||||||||||    
T  55725996 tcattccgttcgttccataaaacccaaacacattgcagccaaatcaaatgaaataaggatcgatgggatttcaagcctcctgcatattcaataaattgca 55725897  T
Q  173 taaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
    ||||||||||  |   || | |||||||||||||| | ||||||||||||    
T  55725896 taaaatgatctgaaatagtaagagaatctaccccttcgacaccaagccaa 55725847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4548694 - 4548473
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| | ||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||||||||||||||||| ||||| | |||| | |    
T  4548694 caccacaagatatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttctttccataaaaccgaga 4548595  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||| |||| ||||||||| ||||| |  || ||||||||||| ||  | ||  |||||| ||||||||||| |||||||||  ||  || | |||||||    
T  4548594 cacattgaaaccaaatcaaatgaaataatgatcgacgcgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatagtatgagaatc 4548495  T
Q  201 tacccctactacaccaagccaa 222  Q
     |||||| | ||||||||||||    
T  4548494 gaccccttcgacaccaagccaa 4548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 17402093 - 17402018
Alignment:
Q  69 cctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgattta 144  Q
    ||||||||||||||||||||| | ||| ||||||||| |||||||||||||||| || ||||| || || ||||||    
T  17402093 cctatcattccgttcattccacaaaactcaaacacaccgaagccaaatcaagtggaaaagagatcgtcgtgattta 17402018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12697478 - 12697699
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||||||||||||||||| ||||| | |||| | |    
T  12697478 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttctttccataaaaccgaga 12697577  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||| |||| ||||||||| ||||| |  ||  |||||||||| ||  | ||  |||||| ||||||||||| ||| |||||  ||  || | |||||||    
T  12697578 cacattgaaaccaaatcaaatgaaataatgattgacgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatcggagatagtatgagaatc 12697677  T
Q  201 tacccctactacaccaagccaa 222  Q
     |||||| | ||||||||||||    
T  12697678 gaccccttcgacaccaagccaa 12697699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 5148402 - 5148497
Alignment:
Q  77 tccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgca 172  Q
    ||||||||||||| | |||| ||||||| |||||||||||||| ||||| | ||| ||||| ||||| ||| | ||  |||||| |||||||||||    
T  5148402 tccgttcattccataaaacctaaacacattgaagccaaatcaaatgaaataaagatcgacgggatttcaagccacctgcatattcaataaattgca 5148497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 23163038 - 23162925
Alignment:
Q  70 ctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagact-ccaacatattgaataaat 168  Q
    ||||||||||| |||||||| | |||||||| |||||||||||||||||| || ||||  || ||||| ||||| || ||| ||| |||  |||||||||    
T  23163038 ctatcattccgctcattccataaaacccaaatacactgaagccaaatcaaatggaagaacgatcgacgtgatttcaa-actaccagcatgctgaataaat 23162940  T
Q  169 tgcataaaatgatcc 183  Q
    |||| ||| ||||||    
T  23162939 tgcaaaaagtgatcc 23162925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 51994198 - 51993979
Alignment:
Q  6 cagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaacacac 105  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  51994198 cagggtatttgattttactttatctaacaattgtggtagagaaccattacggccacgaaacaacatgtcattccgttcattccatataacccaaacacac 51994099  T
Q  106 tgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatctaccc 205  Q
    ||||||||||||||||| |||||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  51994098 tgaagccaaatcaagtggaagagagatcgacgcgatttcaaggcaccagcatattgaataaattgcataaaatgatccaagtgagcatgagaatctaccc 51993999  T
Q  206 ctactacaccaagccaatcc 225  Q
    || |||||||||||||||||    
T  51993998 cttctacaccaagccaatcc 51993979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43388032 - 43388253
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||||||||||||| ||| ||||| | |||| | |    
T  43388032 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccattctttccataaaaccgaga 43388131  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||| |||| ||||||||| ||||| |  || ||||||||||| ||  | ||  |||||| ||||||||||| ||| ||||   ||  || | |||||||    
T  43388132 cacattgaaaccaaatcaaatgaaataatgatcgacgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatatgagatagtatgagaatc 43388231  T
Q  201 tacccctactacaccaagccaa 222  Q
     |||||| | ||||||||||||    
T  43388232 gaccccttcgacaccaagccaa 43388253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 37297927 - 37297864
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaa 125  Q
    |||| ||||||||||||||||||||||| | ||| |||||||||  ||| |||||||| |||||    
T  37297927 gaaataacctatcattccgttcattccataaaactcaaacacaccaaagtcaaatcaaatgaaa 37297864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40176335 - 40176558
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| || ||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||    
T  40176335 caccacatggaatttgattttactttatctaacaactgtagtagagaaccattacggccacgaaacaacctgtcattccgtttattccatacaacccaaa 40176434  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||||||||| |||||| |||||||| |||| |||||| ||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  40176435 cacactgaagccaaa-caagtggaagagagatcgacacgatttcaaggcaccaacatattgaataaattgcataaaatgatccgagggagcatgagaatc 40176533  T
Q  201 tacccctactacaccaagccaatcc 225  Q
    ||||||| |||||||||||||||||    
T  40176534 taccccttctacaccaagccaatcc 40176558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33516259 - 33516038
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| || ||||||||||||||||||||||| ||||  |||||||| ||||||  |||||||||| || ||||||||||||||||| | |  |||||    
T  33516259 caccacatggaatttgattttactttatctaacaactgtcgtagagaacaattacgatcacgaaacaatctgtcattccgttcattccataaagtccaaa 33516160  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||| |||||||||||||||||| |||||||| ||||||||||| ||| | || |||||||||||||||||||||||||||||    |||||| |||||||    
T  33516159 cacgctgaagccaaatcaagtggaagagagatcgacgcgatttcaagccacctacatattgaataaattgcataaaatgatcggtaggagcatgagaatc 33516060  T
Q  201 tacccctactacaccaagccaa 222  Q
    ||||||| | ||||||||||||    
T  33516059 taccccttcgacaccaagccaa 33516038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 14439490 - 14439639
Alignment:
Q  73 tcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgca 172  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||| |||||||  || ||||  ||||| ||| | ||  |||||| |||||||||||    
T  14439490 tcattccgttcattccataaaactgaaacacactgaagccaaatcaaatgaaagaaggaacgacaagatttcaagccacctgcatattcaataaattgca 14439589  T
Q  173 taaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
     ||||||||| |||  |||| |||||||||||||| | ||||||||||||    
T  14439590 caaaatgatctaagatagcatgagaatctaccccttcgacaccaagccaa 14439639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 11000364 - 11000205
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattg 161  Q
    |||| ||| ||||||||||||||||||| | |||| ||||||||| |||||||||||| ||||| |  || ||||| ||||| ||| | ||  ||||||     
T  11000364 gaaataacatatcattccgttcattccataaaaccgaaacacactaaagccaaatcaaatgaaataaggatcgacgagatttcaagccacctgcatattc 11000265  T
Q  162 aataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagcca 221  Q
    ||||||||||| |||||||||  ||  |||| |||||||||||||| | |||||||||||    
T  11000264 aataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagcca 11000205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 12645267 - 12645422
Alignment:
Q  67 aacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataa 166  Q
    ||||||||||| ||||||||||| | ||||||||||||||| ||||||||||| ||||| |  || |||||   ||| ||| |||   |||||| |||||    
T  12645267 aacctatcatttcgttcattccataaaacccaaacacactgcagccaaatcaaatgaaataaggatcgacggcgtttcaagcctcatgcatattcaataa 12645366  T
Q  167 attgcataaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
    ||||| ||||||||||  |   |||| |||||||||||||| | ||||||||||||    
T  12645367 attgcgtaaaatgatctgaaatagcaagagaatctaccccttcgacaccaagccaa 12645422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44023027 - 44023074
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaa 48  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  44023027 caccacagggtatttgattttactttatctaacaactgtggtagagaa 44023074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 17765364 - 17765313
Alignment:
Q  74 cattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaa 125  Q
    ||||||| |||||||| |  |||||||||||||||||||||||||| |||||    
T  17765364 cattccgatcattccataagacccaaacacactgaagccaaatcaaatgaaa 17765313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 15917390 - 15917460
Alignment:
Q  73 tcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgattt 143  Q
    ||||||||||||||||| | |||||||||||| ||||| |||| |||||| || | ||| || ||||||||    
T  15917390 tcattccgttcattccacaaaacccaaacacattgaagtcaaaccaagtggaaaaaagatcgtcgcgattt 15917460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48570514 - 48570293
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    |||||||||| ||||||||||||||||||||||| || || |||||||| |||||| ||| |||||||||  ||||||||||||||||| | || || ||    
T  48570514 caccacagggaatttgattttactttatctaacaactatggtagagaacaattacgaccatgaaacaacccgtcattccgttcattccataaaatccgaa 48570415  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||| | ||  |||||||||||||||||||||||||||||    |||||  ||||||    
T  48570414 cacactgaagccaaatcaagtggaagagagatcgacgcgatttcaagccacctgcatattgaataaattgcataaaatgatccgtatgagcattagaatc 48570315  T
Q  201 tacccctactacaccaagccaa 222  Q
    ||||||| | ||||||||||||    
T  48570314 taccccttcgacaccaagccaa 48570293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36801550 - 36801329
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||||||||||||||||| ||||| | |||| | |    
T  36801550 caccacaaggtatttgattttactttatctaacaagagtggtatagaactttgacgattctgaaataacctatcattccgttctttccataaaaccgaga 36801451  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||| | ||||||||| ||||| |  || ||||||||||| ||| | ||  |||||| ||||||||||| |||||||||  ||  |||| |||||||    
T  36801450 cacactgtaaccaaatcaaatgaaataaggatcgacgcgatttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatc 36801351  T
Q  201 tacccctactacaccaagccaa 222  Q
    ||||||| | ||||||||||||    
T  36801350 taccccttcgacaccaagccaa 36801329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 19890403 - 19890548
Alignment:
Q  61 cgaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatatt 160  Q
    ||||| ||||| |||||| ||||| |||| | ||||||||||||||||||||||||||| ||||| | ||| ||||| ||||| ||| | ||  ||||||    
T  19890403 cgaaataacctgtcattctgttcagtccataaaacccaaacacactgaagccaaatcaaatgaaataaagatcgacgggatttcaagccacctgcatatt 19890502  T
Q  161 gaataaattgcataaaatgatccaagggagcaggagaatctacccc 206  Q
     |||| |||||| |||||||||  ||  |||| |||||||||||||    
T  19890503 caatatattgcacaaaatgatctgagatagcaagagaatctacccc 19890548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33496212 - 33496433
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| |||||||||||| |||| ||||| | |||| | |    
T  33496212 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattctgttctttccataaaaccgaga 33496311  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||| ||||||||| ||||| |  || ||||||||||| ||  | ||  |||||| ||||||||||| ||||||| |  ||  |||| |||||||    
T  33496312 cacactgaaaccaaatcaaatgaaataaggatcgacgcgatttcaaatcacctgcatattcaataaattgcacaaaatgagctgagatagcatgagaatc 33496411  T
Q  201 tacccctactacaccaagccaa 222  Q
    ||||||| | ||||||||||||    
T  33496412 taccccttcgacaccaagccaa 33496433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 7031492 - 7031311
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||| ||   ||| || ||||| || |||     |||| ||||||||||||||||| ||||| | |||| | |    
T  7031492 caccacaaggtatttgattttactttatctagcagtagtggtatagaactatgacgattctgaaataacctatcattccgttctttccataaaaccgaga 7031393  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatc 182  Q
    |||| |||| ||||||||| ||||| |  || ||||||||||| ||| | ||  |||||| ||||||||||| ||| |||||    
T  7031392 cacattgaaaccaaatcaaatgaaataatgatcgacgcgatttcaagccacctgcatattcaataaattgcacaaagtgatc 7031311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 11310602 - 11310444
Alignment:
Q  73 tcattccgttcattccaaataacccaaacacactgaagccaaatcaag----tgaaagagagaccgacgcgatttaaagactccaacatattgaataaat 168  Q
    ||||| ||||||||||| | ||||||||||||||| | |||||||||     ||||| |  || || || ||||| ||| ||||  |||||| |||||||    
T  11310602 tcatttcgttcattccataaaacccaaacacactgcaaccaaatcaatcaaatgaaataaggatcggcgggatttcaagcctcctgcatattcaataaat 11310503  T
Q  169 tgcataaaatgatccaagggagcaggagaatctacccctactacaccaagccaatcctg 227  Q
    ||||||||||||||  |   |||| |||||||||||||| | |||||||||||| ||||    
T  11310502 tgcataaaatgatctgaaatagcaagagaatctaccccttcgacaccaagccaagcctg 11310444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 26771395 - 26771346
Alignment:
Q  70 ctatcattccgttcattccaaataacccaaacacactgaagccaaatcaa 119  Q
    ||||||||||| |||||||| |  ||||||||||||||||||||||||||    
T  26771395 ctatcattccgatcattccataggacccaaacacactgaagccaaatcaa 26771346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 29524159 - 29524039
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattg 161  Q
    |||| ||||||||||||||||| ||||| | |||| | ||||| |||| ||||||||| ||||| |  || |||| |||||| ||  | ||  ||||||     
T  29524159 gaaataacctatcattccgttctttccataaaaccgagacacattgaaaccaaatcaaatgaaataatgatcgacacgatttcaaaccacctgcatattc 29524060  T
Q  162 aataaattgcataaaatgatc 182  Q
    ||||||||||| |||||||||    
T  29524059 aataaattgcacaaaatgatc 29524039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 16178679 - 16178737
Alignment:
Q  67 aacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaa 125  Q
    ||||| |||||||| ||||||||||||| |||||||||  | |||||||| ||||||||    
T  16178679 aacctgtcattccgatcattccaaataatccaaacacataggagccaaataaagtgaaa 16178737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 11203484 - 11203665
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | | |     |||| || |||||||||||||| ||||| | |||| | |    
T  11203484 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgatgattctgaaataatctatcattccgttctttccataaaaccgaga 11203583  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatc 182  Q
    |||| |||| ||||||||| ||||| |  || ||||||||||| ||  | ||  |||||| ||||||||||| ||| |||||    
T  11203584 cacattgaaaccaaatcaaatgaaataatgatcgacgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatc 11203665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29524220 - 29524187
Alignment:
Q  1 caccacagggtatttgattttactttatctaaca 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  29524220 caccacaaggtatttgattttactttatctaaca 29524187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30695818 - 30695785
Alignment:
Q  1 caccacagggtatttgattttactttatctaaca 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  30695818 caccacaaggtatttgattttactttatctaaca 30695785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 12342639 - 12342519
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattg 161  Q
    |||| |||||||||||| |||| ||||| | |||| | ||||| |||| |||||||||  |||| |  || ||||||||||| ||  | ||  ||||||     
T  12342639 gaaataacctatcattctgttctttccataaaaccgagacacattgaaaccaaatcaaaagaaataatgatcgacgcgatttcaaaccacctgcatattc 12342540  T
Q  162 aataaattgcataaaatgatc 182  Q
    ||||||||||| |||||||||    
T  12342539 aataaattgcacaaaatgatc 12342519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 11462138 - 11462298
Alignment:
Q  61 cgaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatatt 160  Q
    ||||| ||||| ||||||| ||||||||| | ||||||||||||||||||||||||||| ||||| | ||| ||||| ||||| ||| | ||  ||||||    
T  11462138 cgaaataacctgtcattccattcattccataaaacccaaacacactgaagccaaatcaaatgaaataaagatcgacgagattttaagccacctgcatatt 11462237  T
Q  161 gaataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagcca 221  Q
     ||||||||||| |||||||||  ||  | || |||||||||||||| | |||||||||||    
T  11462238 caataaattgcacaaaatgatctgagataacatgagaatctaccccttcgacaccaagcca 11462298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20883505 - 20883288
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||| ||||||||||||||||||||   ||| || |||||  | ||||   ||||| ||||| ||||||| ||   |||| | |||||| |    
T  20883505 caccacaaggtatgtgattttactttatctaacaatagtggtatagaactttgacggttccgaaataacctgtcattccatt---tccataaaacccata 20883409  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    ||||||||||||||||||| ||||| | ||| ||||| ||||| ||| | ||  |||||| ||||||||||| |||||| ||  ||  |||| |||||||    
T  20883408 cacactgaagccaaatcaaatgaaataaagatcgacgggatttcaagccacctgcatattcaataaattgcacaaaatggtctgagatagcatgagaatc 20883309  T
Q  201 tacccctactacaccaagcca 221  Q
    ||||||| | |||||||||||    
T  20883308 taccccttcgacaccaagcca 20883288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10577707 - 10577502
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||||||||||||||||| ||||| | || | | |    
T  10577707 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttctttccataaaatcgaga 10577608  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||| |||| ||||||||| ||||| |  || ||||||||||| ||  | ||  |||||| ||||||||||| |||||||||  ||  |||| |||||||    
T  10577607 cacattgaaaccaaatcaaatgaaataaggatcgacgcgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatc 10577508  T
Q  201 tacccc 206  Q
    ||||||    
T  10577507 tacccc 10577502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 14513971 - 14513811
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattg 161  Q
    |||| ||||||||||||||||| ||||| | |||| | ||||| |||| ||||||||| ||||| |  || ||||||||||| ||| | ||  ||||||     
T  14513971 gaaataacctatcattccgttctttccataaaaccgagacacattgaaaccaaatcaaatgaaataatgatcgacgcgatttcaagccacctgcatattc 14513872  T
Q  162 aataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
    ||||||||||| ||| |||||  ||  || | ||||||| |||||| | ||||||||||||    
T  14513871 aataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaa 14513811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 14373396 - 14373286
Alignment:
Q  71 tatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagact-ccaacatattgaataaatt 169  Q
    |||||||||| |||||||| | |||||||| |||||||||||||||||| || ||||  || ||||| ||||| || ||| ||| |||| ||||||||||    
T  14373396 tatcattccgctcattccataaaacccaaaaacactgaagccaaatcaaatggaagaatgatcgacgtgatttcaa-actaccagcatactgaataaatt 14373298  T
Q  170 gcataaaatgat 181  Q
    ||| ||||||||    
T  14373297 gcaaaaaatgat 14373286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 10929779 - 10929637
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||||||||||||||||| ||||| | |||| | |    
T  10929779 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttctttccataaaaccgaga 10929680  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgattt 143  Q
    |||| |||| ||||||||| ||||| | ||| |||||||||||    
T  10929679 cacattgaaaccaaatcaaatgaaataaagatcgacgcgattt 10929637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17606809 - 17606588
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| |||||||||||| |||| ||||| | |||| | |    
T  17606809 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattctgttctttccataaaaccgaga 17606710  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||| |||| ||||||||| ||||| |  || ||||||||||| ||  | ||  |||||| ||||||||||| ||| |||||  ||  || | |||||||    
T  17606709 cacattgaaaccaaatcaaatgaaataatgatcgacgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatc 17606610  T
Q  201 tacccctactacaccaagccaa 222  Q
     |||||| | ||||||||||||    
T  17606609 gaccccttcgacaccaagccaa 17606588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 17579495 - 17579335
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattg 161  Q
    |||| ||||||||||||||||| ||||| | |||| | ||||| | || ||||||||| ||||| |  || ||||||||||| ||| | ||  ||||||     
T  17579495 gaaataacctatcattccgttctttccataaaaccgagacacattaaaaccaaatcaaatgaaataatgatcgacgcgatttcaagccacctgcatattc 17579396  T
Q  162 aataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
    ||||||||||| ||| |||||  ||  || | ||||||| |||||| | ||||||||||||    
T  17579395 aataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaa 17579335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 215068 - 215289
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||||||||||||||||||||||||   ||| || |||||  | |||     |||| ||||||| ||| ||||| ||||| | |||| | |    
T  215068 caccacaaggtatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctattatttcgttctttccataaaaccgaga 215167  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||| |||| ||||||||| ||||| |  ||  |||||||||| ||  | ||  |||||| ||||||||||| |||||||||  ||  |||| || ||||    
T  215168 cacattgaaaccaaatcaaatgaaataaggatagacgcgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatagcatgaaaatc 215267  T
Q  201 tacccctactacaccaagccaa 222  Q
    ||||||| | ||||||| ||||    
T  215268 taccccttcaacaccaaaccaa 215289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 182
Target Start/End: Complemental strand, 21630518 - 21630403
Alignment:
Q  67 aacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataa 166  Q
    |||||||||||| |||| ||||| | |||| | ||||| |||| ||||||||| ||||| |  || ||||||||||| || || ||  |||||| |||||    
T  21630518 aacctatcattctgttctttccataaaaccgatacacattgaaaccaaatcaaatgaaataatgatcgacgcgatttcaaaacacctgcatattcaataa 21630419  T
Q  167 attgcataaaatgatc 182  Q
    |||||| | |||||||    
T  21630418 attgcacacaatgatc 21630403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37254423 - 37254643
Alignment:
Q  1 caccacagggtatttgattttactttatctaacatctgtgatagagaaccattacggccacgaaacaacctatcattccgttcattccaaataacccaaa 100  Q
    ||||||| ||||| ||||||||||||||||||||  |||| || |||||  | || |   ||||| |||||  |||||| ||||||||| | ||||||||    
T  37254423 caccacaaggtatgtgattttactttatctaacaattgtggtatagaactttgacagttccgaaataacctgccattccattcattccataaaacccaaa 37254522  T
Q  101 cacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattgaataaattgcataaaatgatccaagggagcaggagaatc 200  Q
    |||||||||||||||| || ||||| | ||| ||||| ||||  ||| | ||  |||||| ||||||||||| |||||||||  ||  |||| ||||||     
T  37254523 cacactgaagccaaataaaatgaaataaagatcgacgggattccaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatt 37254622  T
Q  201 tacccctactacaccaagcca 221  Q
    ||||||| | |||||||||||    
T  37254623 taccccttcgacaccaagcca 37254643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 25619184 - 25619344
Alignment:
Q  61 cgaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatatt 160  Q
    ||||| ||||| |||||| ||||| |||| | ||||||||||||||||||||||||||| ||||| | ||| ||||| ||||| ||| | ||  ||||||    
T  25619184 cgaaataacctgtcattctgttcagtccataaaacccaaacacactgaagccaaatcaaatgaaataaagatcgacgggatttcaagccacctgcatatt 25619283  T
Q  161 gaataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagcca 221  Q
      |||||||||| |||||||||  ||  |||| |||||||||| ||| | |||||||||||    
T  25619284 cgataaattgcacaaaatgatctgagatagcatgagaatctacaccttcaacaccaagcca 25619344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 18530236 - 18530396
Alignment:
Q  62 gaaacaacctatcattccgttcattccaaataacccaaacacactgaagccaaatcaagtgaaagagagaccgacgcgatttaaagactccaacatattg 161  Q
    |||| |||||||||||| |||| ||||| | |||  ||||||||||||| |||||||| ||||| |  || | ||||||||| ||| | ||  ||||||     
T  18530236 gaaataacctatcattcagttctttccataaaactgaaacacactgaagtcaaatcaaatgaaataaggatcaacgcgatttcaagccacctgcatattc 18530335  T
Q  162 aataaattgcataaaatgatccaagggagcaggagaatctacccctactacaccaagccaa 222  Q
    ||||||||||| |||||||||  |   |||| |||||||||||||| | ||||||||||||    
T  18530336 aataaattgcacaaaatgatctgatatagcatgagaatctaccccttcgacaccaagccaa 18530396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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