View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_low_39 (Length: 236)
Name: NF20114_low_39
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 12358127 - 12357907
Alignment:
| Q |
1 |
atttgagtcatacaagcttatcatttataacgtgcccatatgaattgagctcgatataaagtcttgagttaatagagtgctcacacaccctgcagatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
12358127 |
atttgagtcatacaagcttatcatttataacgtgcccatatgaattgagctcgatataaagtcttgagtttatagtgtgctcacacaccctgcagatcaa |
12358028 |
T |
|
| Q |
101 |
ccagttgcacttaacacataacttaaagattgttttgtataaactaaaatcaaatttaggtggttcaagtattttaaatagagtcttaaattgtcgtact |
200 |
Q |
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||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12358027 |
ccacttgcacttaacacataactttaggtttgttttgtataaactaaaatcaaatttaggtggttcaagtattttaaatagtgtcttaaattgtcgtact |
12357928 |
T |
|
| Q |
201 |
caaccatttacattatctttt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
12357927 |
caaccatttacattatctttt |
12357907 |
T |
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