View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20114_low_41 (Length: 206)
Name: NF20114_low_41
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_41 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 50 - 190
Target Start/End: Original strand, 37480943 - 37481083
Alignment:
| Q |
50 |
acaaaatagcaaaaagcaagatggaaaagcctcctacggtcctaccaggtactacaaggaaaattgcgactcaaacgtagctaaagaaagcaattggagg |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37480943 |
acaaaatagcaaaaagcaagatggaaaagcctcctacggtcctaccaggtactacaaggaaaattgcgactcaaacgtagctaaagaaagcaattggagg |
37481042 |
T |
|
| Q |
150 |
tttagggccaaaattattagagacaatgaggaaagagtttg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37481043 |
tttagggccaaaattattagagacaatgaggaaagagtttg |
37481083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University