View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20114_low_42 (Length: 203)

Name: NF20114_low_42
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20114_low_42
NF20114_low_42
[»] chr6 (11 HSPs)
chr6 (16-187)||(14864375-14864546)
chr6 (101-186)||(15374422-15374507)
chr6 (101-186)||(15324083-15324168)
chr6 (100-186)||(15322313-15322399)
chr6 (101-186)||(15352471-15352556)
chr6 (101-186)||(15372900-15372985)
chr6 (106-186)||(15354223-15354303)
chr6 (24-60)||(15352434-15352470)
chr6 (24-60)||(15324169-15324205)
chr6 (24-60)||(15372863-15372899)
chr6 (24-60)||(15374508-15374544)
[»] chr8 (2 HSPs)
chr8 (16-112)||(35147206-35147302)
chr8 (122-186)||(35146948-35147012)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 14864375 - 14864546
Alignment:
Q  16 aatatcggtgaaaaccattaaaagcatgaacgtctacaacactacaagacagctaattcgcaatgcatgtttcagtataaaaagtcaaacatattttagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||    
T  14864375 aatatcggtgaaaaccattaaaagcatgaacgtctacaacactacaagacagctaattcacaatgcatgtttcagtataaaatgtaaaacatattttagg 14864474  T
Q  116 ttgatgttgcctcttcattgtctgaacaacatggtctttcagtaaggaattgttcccaaaaaacatcattcg 187  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  14864475 ttgatattgcctcttcattgtctgaacagcatggtctttcagtgaggaattgttcccaaaaaacatcattcg 14864546  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 15374507 - 15374422
Alignment:
Q  101 caaacatattttaggttgatgttgcctcttcattgtctgaacaacatggtctttcagtaaggaattgttcccaaaaaacatcattc 186  Q
    |||||||||||||| | ||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  15374507 caaacatattttagttggatattgcctcttcattgtctgaatagcatggtctttcagtaaggaattgttcccaaaacacatcattc 15374422  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 15324168 - 15324083
Alignment:
Q  101 caaacatattttaggttgatgttgcctcttcattgtctgaacaacatggtctttcagtaaggaattgttcccaaaaaacatcattc 186  Q
    |||| ||||||||| | ||| |||||||||||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||    
T  15324168 caaatatattttagttggatattgcctcttcattgtctgaatagcatggtctttaagtaaggaattgttcccaaaacacatcattc 15324083  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 15322313 - 15322399
Alignment:
Q  100 tcaaacatattttaggttgatgttgcctcttcattgtctgaacaacatggtctttcagtaaggaattgttcccaaaaaacatcattc 186  Q
    ||||||||||||||| | ||| ||||||||||||||| |||| | || ||| ||||||||||||||||||||||||| |||||||||    
T  15322313 tcaaacatattttagttggatattgcctcttcattgtttgaatagcaaggtttttcagtaaggaattgttcccaaaacacatcattc 15322399  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 15352471 - 15352556
Alignment:
Q  101 caaacatattttaggttgatgttgcctcttcattgtctgaacaacatggtctttcagtaaggaattgttcccaaaaaacatcattc 186  Q
    |||||||||||||| | ||| |||||||||||| ||||||| |  ||||||||| ||||||||||||||||||||| |||||||||    
T  15352471 caaacatattttagttggattttgcctcttcatagtctgaatagaatggtcttttagtaaggaattgttcccaaaacacatcattc 15352556  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 15372900 - 15372985
Alignment:
Q  101 caaacatattttaggttgatgttgcctcttcattgtctgaacaacatggtctttcagtaaggaattgttcccaaaaaacatcattc 186  Q
    |||||||||||||| | ||| || |||||||||||||| || | |||||||||||||||||||||||||||| ||| |||||||||    
T  15372900 caaacatattttagttggatatttcctcttcattgtctaaatagcatggtctttcagtaaggaattgttcccgaaagacatcattc 15372985  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 15354303 - 15354223
Alignment:
Q  106 atattttaggttgatgttgcctcttcattgtctgaacaacatggtctttcagtaaggaattgttcccaaaaaacatcattc 186  Q
    ||||||||| | ||| ||||||||||||||||| || | |||||||||||| ||||||||||||||||||| |||||||||    
T  15354303 atattttagttggatattgcctcttcattgtctaaatagcatggtctttcaataaggaattgttcccaaaacacatcattc 15354223  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 15352434 - 15352470
Alignment:
Q  24 tgaaaaccattaaaagcatgaacgtctacaacactac 60  Q
    ||||||||||||||||| |||||||||||||||||||    
T  15352434 tgaaaaccattaaaagcttgaacgtctacaacactac 15352470  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 15324205 - 15324169
Alignment:
Q  24 tgaaaaccattaaaagcatgaacgtctacaacactac 60  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  15324205 tgaaaaccattaaaagcttgaatgtctacaacactac 15324169  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 15372863 - 15372899
Alignment:
Q  24 tgaaaaccattaaaagcatgaacgtctacaacactac 60  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  15372863 tgaaaaccattaaaagcttgaacgtatacaacactac 15372899  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 15374544 - 15374508
Alignment:
Q  24 tgaaaaccattaaaagcatgaacgtctacaacactac 60  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  15374544 tgaaaaccattaaaagcttgaacttctacaacactac 15374508  T

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Target: chr8 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 35147302 - 35147206
Alignment:
Q  16 aatatcggtgaaaaccattaaaagcatgaacgtctacaacactacaagacagctaattcgcaatgcatgtttcagtataaaaagtcaaacatatttt 112  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  35147302 aataccggtgaaaaccattaaaagcttgaacgtctacaacactaccagacaactaattcgcaatgcatgtttcagtctaaaaagtcaaacatatttt 35147206  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 35147012 - 35146948
Alignment:
Q  122 ttgcctcttcattgtctgaacaacatggtctttcagtaaggaattgttcccaaaaaacatcattc 186  Q
    |||||||||||||||||||||| | |||||||||||||||||| | ||||||||| |||||||||    
T  35147012 ttgcctcttcattgtctgaacagcctggtctttcagtaaggaaattttcccaaaacacatcattc 35146948  T

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