View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_low_5 (Length: 639)
Name: NF20114_low_5
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 17 - 625
Target Start/End: Original strand, 52422777 - 52423385
Alignment:
| Q |
17 |
aatatgttgttttaataaatcaaaacgtgagaaatagtgacaagcttttgagtttatttaacaatattttggtgtagtgatcattacattgatttaagat |
116 |
Q |
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| T |
52422777 |
aatatgttgttttaataaatcaaaacgtgagaaatagtgacaagcttttgagtttatttaacaatattttggtgtagtgatcattacattgatttaagat |
52422876 |
T |
|
| Q |
117 |
ttgactccttcaataatacaggaaagaaaaaacgttagttatcatttataatgcaagttacttatattgggagacactgcatgttcaattctaaattaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52422877 |
ttgactccttcaataatacaggaaagaaaaaacgttagttatcatttataaggcaagttacttatattgggagacactgcatattcaattctaaattaca |
52422976 |
T |
|
| Q |
217 |
acagaaatccaatattatgtgttcccacgagtgcttttgtttaaattcttaataatgcgaaaaattgggtcgaatttaatcaccaacctcttaggtctaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52422977 |
acagaaatccaatattatgtgttcccacgagtgcttttgtttaaattcttaataatgcgaaaaattgggtcgaatttaatcaccaacctcttaggtctaa |
52423076 |
T |
|
| Q |
317 |
taaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaattctttgaatagaagatgaca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52423077 |
taaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaattctgtgaatagaagatgaca |
52423176 |
T |
|
| Q |
417 |
acataatcattgatcagttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgnnnnnnnccta |
516 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52423177 |
acataatcattgatcatttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgaaaaaaaccta |
52423276 |
T |
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| Q |
517 |
aatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaaggggat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423277 |
aatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaaggggat |
52423376 |
T |
|
| Q |
617 |
tcgtctctg |
625 |
Q |
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||||||||| |
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| T |
52423377 |
tcgtctctg |
52423385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 277 - 501
Target Start/End: Original strand, 42715940 - 42716166
Alignment:
| Q |
277 |
aaaattgggtcgaatttaatcaccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatact-gggtaggtctg |
375 |
Q |
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| T |
42715940 |
aaaattgggtc-aatttaatcaccaacctcttaggtctaataaccaatctattcaaaagcaagtttgtttcaagttctctatcatactggggtaggtctg |
42716038 |
T |
|
| Q |
376 |
agtagagcaacttcttcca-attctttgaatagaagatgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctat-tcc |
473 |
Q |
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||||||| |||||||| || || |||| ||||||||||| | |||||||||||||| ||| | |||||| ||||||| || ||||||||||||| ||| |
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| T |
42716039 |
agtagagaaacttcttacagtttttttgtatagaagatgaaagcataatcattgatctgttcatttattaaaaaattgctactgattagcatctatctcc |
42716138 |
T |
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| Q |
474 |
agttccttagattacaagtttccaagtc |
501 |
Q |
| |
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| T |
42716139 |
aattccttagattacaagtttccaagtc |
42716166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 42715493 - 42715529
Alignment:
| Q |
157 |
atcatttataatgcaagttacttatattgggagacac |
193 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
42715493 |
atcatttataatgcaaattacttatattgggagacac |
42715529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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