View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20114_low_8 (Length: 523)
Name: NF20114_low_8
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 41081063 - 41080566
Alignment:
| Q |
18 |
agtattggtcttgatgagtgcaagtttttcctcaaagctgttgtcaactcaggcattggtgaggaaacttatgctccaagaaacttcatcgaaggccgaa |
117 |
Q |
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| T |
41081063 |
agtattggtcttgatgagtgcaagttcttcctcaaagctgttgtcaactcaggcattggtgaggaaacttatgctccaagaaacttcatcgaaggccgaa |
41080964 |
T |
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| Q |
118 |
ctgtgaaccctacgttggaagacggagtggaggagatggaagagttttgtaatgatagcattgcaaagcttctaaacaaatcaggcatttcaccttcgga |
217 |
Q |
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| T |
41080963 |
ctgtgaaccctacgttggaagacggagtggaggagatggaagagttttgtaatgatagcattacaaagcttctaaataaatcaggcatttcaccttcgga |
41080864 |
T |
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| Q |
218 |
gatcgatattcttgtggtaaatgtatctttattctcttctgttccttctttaacttcaagaatcattaaccattacagaatgagagaggatataaaagct |
317 |
Q |
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| T |
41080863 |
gatcgatattcttgtggtaaatgtatctttattctcttctgttccttctttaacttcaagaatcattaaccattacaaaatgagagaggatataaaagct |
41080764 |
T |
|
| Q |
318 |
tataacctatctggtatgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaa |
417 |
Q |
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| T |
41080763 |
tataacctatctggtatgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaa |
41080664 |
T |
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| Q |
418 |
catcagagtctcttagtacaaattggtattcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattcttctc |
515 |
Q |
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| T |
41080663 |
catcagagtctcttagtacaaattggtattcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattcttctc |
41080566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 328 - 512
Target Start/End: Complemental strand, 23078267 - 23078083
Alignment:
| Q |
328 |
ctggtatgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtc |
427 |
Q |
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|||| |||||||||||||||||||| || ||| |||| || || ||||||||||||| ||| ||| ||||||| || |||||| | ||||||||||| |
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| T |
23078267 |
ctggaatgggttgtagtgctagtcttatatcagtagatattgttaaaaacattttcaaatcacaaagaaacaagttagcacttttggtcacatcagagtc |
23078168 |
T |
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| Q |
428 |
tcttagtacaaattggtattcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattctt |
512 |
Q |
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| T |
23078167 |
tcttagtccaaattggtatcctggtagtaatagatcaatgatcttagccaattgtctttttcgcaccggcggttgtgccattctt |
23078083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 502
Target Start/End: Complemental strand, 23073728 - 23073485
Alignment:
| Q |
259 |
ttccttctttaacttcaagaatcattaaccattacagaatgagagaggatataaaagcttataacctatctggtatgggttgtagtgctagtctaatctc |
358 |
Q |
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| T |
23073728 |
ttccttctttatcttcgcgaatcattaaccgttacaaaatgagacacgacgtaaaagtgtacaatctcaccggaatgggttgtagtgcaagtcttatatc |
23073629 |
T |
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| Q |
359 |
attagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggtattcaggaatcaat |
458 |
Q |
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| T |
23073628 |
attagatattgttaaaaacattttcaaatcacagagaaataagttagcacttttggtcacatcagagtctcttagtccaaattggtatactggcaatgat |
23073529 |
T |
|
| Q |
459 |
aggtcaatgattcttgcaaattgtcttttccgtaccggcggttg |
502 |
Q |
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| T |
23073528 |
agatcaatgatcctagccaactgtcttttccgttccggcggttg |
23073485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 446
Target Start/End: Original strand, 23110707 - 23110820
Alignment:
| Q |
333 |
atgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctctta |
432 |
Q |
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|||||||| ||||||||||| || ||| |||| || || ||||||||||||| ||| ||| || |||| || |||||| | ||||||||||||||| |
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| T |
23110707 |
atgggttgcagtgctagtcttatttcactagatattgttaaaaacattttcaaatcacaaagaaataagttagcacttttggtcacatcagagtctcttt |
23110806 |
T |
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| Q |
433 |
gtacaaattggtat |
446 |
Q |
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| T |
23110807 |
gtccaaattggtat |
23110820 |
T |
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