View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20114_low_9 (Length: 496)
Name: NF20114_low_9
Description: NF20114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20114_low_9 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0141 (1 HSPs) |
| | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 220 - 496
Target Start/End: Original strand, 44285603 - 44285878
Alignment:
| Q |
220 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
319 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || || |||||||||||| |
|
|
| T |
44285603 |
ttcttaccggaagttacattgaagaatatatccattaaaggaagattggccaatggggatctttacctaacgatgcggagcaaattcggcatttcttgct |
44285702 |
T |
|
| Q |
320 |
agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg |
419 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
44285703 |
agttcttctcccaatctcggactcgaccttttagccgattcgcacctttactctctgtctcaatcaattcggtcagatcaatagagaagtcaggcactcg |
44285802 |
T |
|
| Q |
420 |
atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagt |
496 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44285803 |
attgacttaaaggaagattccg-ccgtaaattgattgatcaatgttaccgggaagcagcaacagagatggattgagt |
44285878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 220 - 496
Target Start/End: Complemental strand, 44070410 - 44070135
Alignment:
| Q |
220 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
319 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||| || |||||||||||| |
|
|
| T |
44070410 |
ttcttaccagaagttacattgaagaatatatccattaaagcaagattggacaatggagatctttaccttacaatgcggagcgaattcggcatttcttgct |
44070311 |
T |
|
| Q |
320 |
agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg |
419 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
44070310 |
agttcttctcccaatctcggactcagccgtttagccggtttgcacctttactctctgtctcaatctagccggtcagatcaatagagaagtcaggcacttg |
44070211 |
T |
|
| Q |
420 |
atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagt |
496 |
Q |
| |
|
|| ||||||||||||||||||| |||| |||| ||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
44070210 |
attgacttaaaggaaggttccg-ccgttaattgattgattgatgttgccaggaagcagcaacagagacagattgagt |
44070135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 49238086 - 49237921
Alignment:
| Q |
9 |
agcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
49238086 |
agcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggtacgacatgcattggaacgaactccgcggagag |
49237987 |
T |
|
| Q |
109 |
ccactctttggtccaataaagagacagatcagcatccatagaatctatctagaaagaggcagtctg |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
49237986 |
ccactctttggtccaataaagagacagatcatcatccatagaatctatctagaaataggcagtctg |
49237921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 6184 - 6329
Alignment:
| Q |
9 |
agcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6184 |
agcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagag |
6283 |
T |
|
| Q |
109 |
ccactctttggtccaataaagagacagatcagcatccatagaatct |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6284 |
ccactctttggtccaataaagagacagatcagcatccatagaatct |
6329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 496
Target Start/End: Complemental strand, 16443843 - 16443758
Alignment:
| Q |
410 |
caggcactcgatagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagt |
496 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| || |||| ||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
16443843 |
caggcacttgattgacttaaaggaaggttccgcc-gttaattgattgattgatgttgccaggaagcagcaacagagacagattgagt |
16443758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University