View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_high_1 (Length: 591)
Name: NF20115_high_1
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 47117152 - 47116595
Alignment:
| Q |
1 |
gcacgagcatgtcggttcaatggcgacatcatcaccggcgaagatggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctat |
100 |
Q |
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| T |
47117152 |
gcacgagcatgtcgattcaatggcgacatcatcaccggtgaagacggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctat |
47117053 |
T |
|
| Q |
101 |
ccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgtta |
200 |
Q |
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| T |
47117052 |
ccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcga----gtcattgatacgttgatattgcttaccttgctttgtgatttgatcgtta |
47116957 |
T |
|
| Q |
201 |
aaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgag |
300 |
Q |
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| T |
47116956 |
aaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgag |
47116857 |
T |
|
| Q |
301 |
aagcgatgaaacaaaacaatgtcagnnnnnnngagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgtgga |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47116856 |
aagcgatgaaacaaaacaatgtcagaaaaaaagagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgtgga |
47116757 |
T |
|
| Q |
401 |
aggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaaattttctttgtaactgtctccccgaactttcagtaattaatac |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47116756 |
aggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaacttttctttgtaactgtctccccgaactttcagtaattaatac |
47116657 |
T |
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| Q |
501 |
cacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat |
562 |
Q |
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| T |
47116656 |
cacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat |
47116595 |
T |
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