View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_high_12 (Length: 262)
Name: NF20115_high_12
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 30718761 - 30719003
Alignment:
| Q |
1 |
ttactataaaaaacccaataacaaaatagaagaataccataccatacacctccgattaaacaacgaccaatcagtcatttcatccaaatcaaatgaacat |
100 |
Q |
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| T |
30718761 |
ttactataaagaacccaataacaaaatagaagaataccataccatacacctccgattaaacaatgaccaatcagtcatttcatacaaatcaaatgatcat |
30718860 |
T |
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| Q |
101 |
tacaaattcaaacaatcttcatnnnnnnnnnntgacaaagccacagaatgaataattgaaggtgtgaaagagcattacatgttccacaagtggtgttttt |
200 |
Q |
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| T |
30718861 |
tacaaattcaaacaatcttcataaaaaaaaaatgacaaagccacagaatgaataattgaaggtgtgaaagagcattacatgttccacaagtggtgttttt |
30718960 |
T |
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| Q |
201 |
gtataccagggtgcgacacagttgctcctgatgttgtctttcg |
243 |
Q |
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| T |
30718961 |
gtataccagggtgcgacacagttgctccttatgttgtctttcg |
30719003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 30705936 - 30706010
Alignment:
| Q |
167 |
aaagagcattacatgttccacaagtggtgtttttgtataccagggtgcgacacagttgctcctgatgttgtcttt |
241 |
Q |
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|||||||||||| ||||||||||| | ||||||||||||||| ||||| |||||||||||||| || |||||||| |
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| T |
30705936 |
aaagagcattacctgttccacaagcgatgtttttgtataccacggtgcaacacagttgctccttatattgtcttt |
30706010 |
T |
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