View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20115_high_17 (Length: 238)
Name: NF20115_high_17
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 42077047 - 42077228
Alignment:
| Q |
39 |
tcaacttagtgaaagtcc-aagaatgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgctt |
137 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
42077047 |
tcaacttagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagtgcttgcttaaacgaatctctggcatctcagtgctt |
42077146 |
T |
|
| Q |
138 |
gagaattaaaccttggaaaacaatagttctaagagtcctttctttctacagtttgcacatttctatgatactgatttccact |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
42077147 |
gagaattaaaccttggaaaacaataggtctaatagtcctttctttctacagtttccacatttctatgatacttatttccact |
42077228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 48466274 - 48466455
Alignment:
| Q |
39 |
tcaacttagtgaaagtcc-aagaatgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgctt |
137 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| || || |||||| |
|
|
| T |
48466274 |
tcaatttagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagttcttgattaaacgagtcccgggaatttcagtgctc |
48466373 |
T |
|
| Q |
138 |
gagaattaaaccttggaaaacaatagttctaagagtcctttctttctacagtttgcacatttctatgatactgatttccact |
219 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
48466374 |
gagaattaaaccttggaaaacagtaggtctaatagtcctttctttctacagtttccacatttctatgatactgagttccact |
48466455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 25585238 - 25585320
Alignment:
| Q |
62 |
tgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
144 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||||||| || ||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
25585238 |
tgtattcaaccaagcgattgaattagcaaatgaagcaaagtcctctcttaaacgattccctggaatcttagtgcttgagaatt |
25585320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 25590121 - 25590203
Alignment:
| Q |
62 |
tgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
144 |
Q |
| |
|
|||||| || |||| ||| ||||||| |||||||||||||| ||||| |||||| |||||||| || |||||||||||||| |
|
|
| T |
25590121 |
tgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgctaaaacgaatccctggcgtctcagtgcttgagaatt |
25590203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 25599773 - 25599855
Alignment:
| Q |
62 |
tgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
144 |
Q |
| |
|
|||||| || |||| ||| ||||||| |||||||||||||| ||||| |||||| |||||||| || |||||||||||||| |
|
|
| T |
25599773 |
tgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgctaaaacgaatccctggcgtctcagtgcttgagaatt |
25599855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University