View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_low_11 (Length: 285)
Name: NF20115_low_11
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 28922466 - 28922363
Alignment:
| Q |
19 |
tggagtctgtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagca |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28922466 |
tggagtctgtggtgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagca |
28922367 |
T |
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| Q |
119 |
ccgc |
122 |
Q |
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|||| |
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| T |
28922366 |
ccgc |
28922363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 21107529 - 21107632
Alignment:
| Q |
19 |
tggagtctgtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagca |
118 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21107529 |
tggagtctgtggcgttttacatgtatattttcacaatgcaaattgcatgattttcattgtcgtgctagtcatgtggtaaagggcgtcgtgctacatagca |
21107628 |
T |
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| Q |
119 |
ccgc |
122 |
Q |
| |
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|||| |
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| T |
21107629 |
ccgc |
21107632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 21103338 - 21103437
Alignment:
| Q |
19 |
tggagtctgtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagca |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
21103338 |
tggagtctgtggcgttttgcatgtatattttcacaatgcaaattgcatgattttcattgtcgtgctagtcatgtggtaaagggcgccgtgctacatagca |
21103437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 21104386 - 21104489
Alignment:
| Q |
19 |
tggagtctgtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagca |
118 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
21104386 |
tggagtctgtggcgttttgcatgtatattttcacagtgcaaattgcatgattttcattgtcgtgctagtcatgtggtaaagggcgccgtgctacatagca |
21104485 |
T |
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| Q |
119 |
ccgc |
122 |
Q |
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|||| |
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| T |
21104486 |
ccgc |
21104489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 21105434 - 21105537
Alignment:
| Q |
19 |
tggagtctgtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagca |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
21105434 |
tggagtctgtggcgttttgcatgtatattttcacaatgcaaattgcatgattttcattgtcgtgctagtcatgtggtaaagggtgcagtgctacatagca |
21105533 |
T |
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| Q |
119 |
ccgc |
122 |
Q |
| |
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|||| |
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|
| T |
21105534 |
ccgc |
21105537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 21106482 - 21106585
Alignment:
| Q |
19 |
tggagtctgtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagca |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||| |
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| T |
21106482 |
tggagtctgtggcgttttgcatgtatattttcacaatgcgaattgcatgattttcattaacatgctagtcatgtggtaaagggcgccgtgctacatagca |
21106581 |
T |
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| Q |
119 |
ccgc |
122 |
Q |
| |
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|||| |
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|
| T |
21106582 |
ccgc |
21106585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 18243685 - 18243785
Alignment:
| Q |
19 |
tggagtctgtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagca |
118 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
18243685 |
tggagtctgtggtgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcctgctatatagca |
18243784 |
T |
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| Q |
119 |
c |
119 |
Q |
| |
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| T |
18243785 |
c |
18243785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 18243863 - 18243943
Alignment:
| Q |
196 |
cactgattaacattctcatattatttattggctatgatatgaaatgaatggccattggccaacgacatacttatcctatgct |
277 |
Q |
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| T |
18243863 |
cactgattaacattcttatattgtt-attggctatgatatgaaatgaatggccattggccaacgacaaacttatcctatgct |
18243943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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