View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_low_12 (Length: 285)
Name: NF20115_low_12
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 29409050 - 29409305
Alignment:
| Q |
19 |
caagtaacaagatatattgcaatacaaaacaacttaaacacttgataaatagccaaataacttgaaaaactctgatattgaacatacccttgactttcac |
118 |
Q |
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| T |
29409050 |
caagtaacaagatatattgcaatacaaaacaacttaaacacttgataaatagccaaataacttgaaaa-ctctgatactgaacatacccttgactttcac |
29409148 |
T |
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| Q |
119 |
atataacaccccaatgtaaaaccattgagccactagtatttgaaagctgaatatctacttgcgttgcggctcctgatcctgaagaaccgacattgacctg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29409149 |
atataacaccccaatgtaaaaccattgagccactagtatttgaaagctgaatatctacttgcgttgcggctcctgatcctgaagaaccgacattgacctg |
29409248 |
T |
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| Q |
219 |
ctccatcgcgtaaaagcaaccgttagctaatgtattactgatttactatgatttcat |
275 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
29409249 |
ctccatcgcgtaaaagcaactgttagctaatgtattactaatttactatgatttcat |
29409305 |
T |
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