View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_low_13 (Length: 279)
Name: NF20115_low_13
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 33357090 - 33357368
Alignment:
| Q |
1 |
ttaataattatttttaaaaacaaccattattaatgttgaatagtgaaaaataattcactaaaataagtttaatgagaaaggataatatttcttgcactta |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357090 |
ttaataattattttaaaaaacaaccattattaatgttgaatagtgaaaaataattcactaaaataagtttaatgagaaaggataatatttcttgcactta |
33357189 |
T |
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| Q |
101 |
cataacatccgtcactatcacttctgtatattataggggcaatttttattctcctatttcaaacatatgacatttttggtgttgaatgtttgatgtatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357190 |
cataacatccgtcactatcacttctgtatattataggggcaatttttattctcctatttcaaacatatgacatttttggtgttgaatgtttgatgtatca |
33357289 |
T |
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| Q |
201 |
tatcatttaaatgtgattatcatagcaccttttgagaaggttggggaagtgaaagctagaggctggactatttaataac |
279 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357290 |
tatcatttaaatgtgattatcatagcacctgttgagaaggttggggaagtgaaagctagaggctggactatttaataac |
33357368 |
T |
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