View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_low_14 (Length: 272)
Name: NF20115_low_14
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 3118575 - 3118829
Alignment:
| Q |
2 |
acattgtataaaaaagtatactaataccgttaacctttggttaccttcattcggaagaatcatgtgtg--------tgtttaaacacatttaataatttg |
93 |
Q |
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| T |
3118575 |
acattgtataaaaaagtgtactaataccgttaacctttggttaccttcattcggaagaatcatgtgtacatgtgtctgtttaaacacatttaataatttg |
3118674 |
T |
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| Q |
94 |
actggcatattgctgaataggnnnnnnnacagcatgataaaagaaaattgtcaaaaggctaagaaacaatacagggggtgctagactctattatcaaaat |
193 |
Q |
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| T |
3118675 |
actggcatattactgaataggtttttttacagaatgataaaagaaaattgtcaaaaggctaagaaacaatacagggggtgctagactctattatcaaaat |
3118774 |
T |
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| Q |
194 |
gcnnnnnnnnnnnnnnnncgacgcatagaatgaggaggggcatctaaagtagtccaagagaa |
255 |
Q |
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| T |
3118775 |
gc-------aaaaaaaaacgacgcatagaatgaggaggggcatctaaagtagtccaagagaa |
3118829 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 42916218 - 42916181
Alignment:
| Q |
127 |
atgataaaagaaaattgtcaaaaggctaagaaacaata |
164 |
Q |
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| T |
42916218 |
atgataaaagaaaattgtcaaaaagctaagaatcaata |
42916181 |
T |
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